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[DATALAD RUNCMD] Compute SBL/sub-0051582

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/SBL/sub-0051582/anat/sub-0051582_T1w.nii.gz"
 ],
 "outputs": [
  "SBL/sub-0051582"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
Felix Hoffstaedter 6 miesięcy temu
rodzic
8c4b7e5e26
commit
404beb8a27
100 zmienionych plików z 99 dodań i 0 usunięć
Widok podzielony Pokaż statystyki zmian
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      SBL/sub-0051582/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051582_T1w.csv
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      SBL/sub-0051582/mri/Tian_Subcortex_S2_7T_sub-0051582_T1w.csv
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      SBL/sub-0051582/mri/cobra_sub-0051582_T1w.csv
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  28. 1 0
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  52. 1 0
      SBL/sub-0051582/mri/t_sub-0051582_T1w_affine_reorient.mat
  53. 1 0
      SBL/sub-0051582/mri/t_sub-0051582_T1w_rigid_reorient.mat
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  64. 1 0
      SBL/sub-0051582/report/cat_sub-0051582_T1w.mat
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  69. 1 0
      SBL/sub-0051582/surf/lh.area.sub-0051582_T1w
  70. 1 0
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      SBL/sub-0051582/surf/lh.depth.sub-0051582_T1w
  72. 1 0
      SBL/sub-0051582/surf/lh.edgemap32k.sub-0051582_T1w.mat
  73. 1 0
      SBL/sub-0051582/surf/lh.fractaldimension.sub-0051582_T1w
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  81. 1 0
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      SBL/sub-0051582/surf/rh.thickness.sub-0051582_T1w
  92. 1 0
      SBL/sub-0051582/surf/rh.toroGI20mm.sub-0051582_T1w
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SBL/sub-0051582/label/catROI_sub-0051582_T1w.mat
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+../../../.git/annex/objects/pM/MQ/MD5E-s61356--85cc01d35d062a9332fec7f3a7b638fb.mat/MD5E-s61356--85cc01d35d062a9332fec7f3a7b638fb.mat

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SBL/sub-0051582/label/catROI_sub-0051582_T1w.xml
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+../../../.git/annex/objects/Mq/fZ/MD5E-s189010--b706209fcdaa266690413382f920fdd6.xml/MD5E-s189010--b706209fcdaa266690413382f920fdd6.xml

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SBL/sub-0051582/label/catROIs_sub-0051582_T1w.mat
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+../../../.git/annex/objects/qZ/q6/MD5E-s120249--fb69318489c464f6b62061969903f81e.mat/MD5E-s120249--fb69318489c464f6b62061969903f81e.mat

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SBL/sub-0051582/label/catROIs_sub-0051582_T1w.xml
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+../../../.git/annex/objects/kk/xx/MD5E-s332147--e8bcc5ef9f5c5e07a1c0b046aff304f8.xml/MD5E-s332147--e8bcc5ef9f5c5e07a1c0b046aff304f8.xml

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SBL/sub-0051582/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051582_T1w.csv
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+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

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+../../../.git/annex/objects/jv/KJ/MD5E-s196307--21bd62e5569a44da2ffd06ce46275284.nii.gz/MD5E-s196307--21bd62e5569a44da2ffd06ce46275284.nii.gz

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SBL/sub-0051582/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051582_T1w.csv
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+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

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+../../../.git/annex/objects/6X/2q/MD5E-s219456--c52309d996aec9defd9840ea6501c7c3.nii.gz/MD5E-s219456--c52309d996aec9defd9840ea6501c7c3.nii.gz

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SBL/sub-0051582/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051582_T1w.csv
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+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

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+../../../.git/annex/objects/k6/kP/MD5E-s276990--6dfc083fee12e3d69eb11fbb4971b27e.nii.gz/MD5E-s276990--6dfc083fee12e3d69eb11fbb4971b27e.nii.gz

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SBL/sub-0051582/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051582_T1w.csv
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+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

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+../../../.git/annex/objects/9X/15/MD5E-s307113--7c72164038b8059a76decfe7392949b2.nii.gz/MD5E-s307113--7c72164038b8059a76decfe7392949b2.nii.gz

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SBL/sub-0051582/mri/Tian_Subcortex_S2_7T_sub-0051582_T1w.csv
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+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

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+../../../.git/annex/objects/6m/2F/MD5E-s25985--3fb9a35297dbf066156c37838c8b11b1.nii.gz/MD5E-s25985--3fb9a35297dbf066156c37838c8b11b1.nii.gz

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+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

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+../../../.git/annex/objects/Z6/FQ/MD5E-s220277--ff66263ee1c2062b0b756180ec8c5954.nii.gz/MD5E-s220277--ff66263ee1c2062b0b756180ec8c5954.nii.gz

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SBL/sub-0051582/mri/anatomy3_sub-0051582_T1w.csv
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+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

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+../../../.git/annex/objects/j6/40/MD5E-s156490--de281df51b010212806e0aaf12adf52f.nii.gz/MD5E-s156490--de281df51b010212806e0aaf12adf52f.nii.gz

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+../../../.git/annex/objects/QQ/Vk/MD5E-s5466146--61d5528b352d0d6826e5a3b32b5a1fda.nii.gz/MD5E-s5466146--61d5528b352d0d6826e5a3b32b5a1fda.nii.gz

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+../../../.git/annex/objects/q5/fW/MD5E-s11106938--368e6e7b9330ce185e11204406cb4ee6.nii.gz/MD5E-s11106938--368e6e7b9330ce185e11204406cb4ee6.nii.gz

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+../../../.git/annex/objects/12/XW/MD5E-s128245--84993539e428f5ccd049e863a65b96f0.nii.gz/MD5E-s128245--84993539e428f5ccd049e863a65b96f0.nii.gz

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+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

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+../../../.git/annex/objects/5m/gW/MD5E-s54248--cf99ea8c39566bdce9599fb38b993ce5.nii.gz/MD5E-s54248--cf99ea8c39566bdce9599fb38b993ce5.nii.gz

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+ 1 - 0
SBL/sub-0051582/surf/rh.edgemap32k.sub-0051582_T1w.mat
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+../../../.git/annex/objects/W6/GG/MD5E-s862226--78c79189eff1555cfba617b139bcf6ee.mat/MD5E-s862226--78c79189eff1555cfba617b139bcf6ee.mat

+ 1 - 0
SBL/sub-0051582/surf/rh.fractaldimension.sub-0051582_T1w
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+../../../.git/annex/objects/wv/KZ/MD5E-s346107--4ea7fbaf9b800af222742605db62e587/MD5E-s346107--4ea7fbaf9b800af222742605db62e587

+ 1 - 0
SBL/sub-0051582/surf/rh.gmv.sub-0051582_T1w
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+../../../.git/annex/objects/pV/fM/MD5E-s346107--8ebf0f198b31755ec4b8461064beb838/MD5E-s346107--8ebf0f198b31755ec4b8461064beb838

+ 1 - 0
SBL/sub-0051582/surf/rh.gyrification.sub-0051582_T1w
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+../../../.git/annex/objects/VQ/QK/MD5E-s346107--4c91ff8bc87c251addc78c72ac4a260f/MD5E-s346107--4c91ff8bc87c251addc78c72ac4a260f

+ 1 - 0
SBL/sub-0051582/surf/rh.pbt.sub-0051582_T1w
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+../../../.git/annex/objects/Zg/Jv/MD5E-s346107--eece88091e5b5451b80ca894a8e23438/MD5E-s346107--eece88091e5b5451b80ca894a8e23438

+ 1 - 0
SBL/sub-0051582/surf/rh.sphere.reg.sub-0051582_T1w.gii
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+../../../.git/annex/objects/P8/2W/MD5E-s4155738--d3e4e6288ab866c5b75716283218cc3d.gii/MD5E-s4155738--d3e4e6288ab866c5b75716283218cc3d.gii

+ 1 - 0
SBL/sub-0051582/surf/rh.sphere.sub-0051582_T1w.gii
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+../../../.git/annex/objects/M4/kf/MD5E-s4155726--9c2e2e6912a52a76c7c86fd34bbe6832.gii/MD5E-s4155726--9c2e2e6912a52a76c7c86fd34bbe6832.gii

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SBL/sub-0051582/surf/rh.thickness.sub-0051582_T1w
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+../../../.git/annex/objects/5m/Mj/MD5E-s346107--d68ab8acdcf6a999bc4d983810984b04/MD5E-s346107--d68ab8acdcf6a999bc4d983810984b04

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SBL/sub-0051582/surf/rh.toroGI20mm.sub-0051582_T1w
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+../../../.git/annex/objects/m1/45/MD5E-s346107--4a780832e9df81852ae20a1b5dc3ad95/MD5E-s346107--4a780832e9df81852ae20a1b5dc3ad95

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SBL/sub-0051582/surf/s12.mesh.thickness.resampled_32k.sub-0051582_T1w.dat
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+../../../.git/annex/objects/W9/GP/MD5E-s2599264--77cec776d21d55481307061e51ad2d63.dat/MD5E-s2599264--77cec776d21d55481307061e51ad2d63.dat

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SBL/sub-0051582/surf/s12.mesh.thickness.resampled_32k.sub-0051582_T1w.gii
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+../../../.git/annex/objects/fZ/79/MD5E-s2285--4b9722b9fda6977658c0a38dadf453e6.gii/MD5E-s2285--4b9722b9fda6977658c0a38dadf453e6.gii

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SBL/sub-0051582/surf/s22.mesh.area.resampled_32k.sub-0051582_T1w.dat
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+../../../.git/annex/objects/k3/3P/MD5E-s2599264--9eb130513fc7b2c949b12c9c05354a46.dat/MD5E-s2599264--9eb130513fc7b2c949b12c9c05354a46.dat

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SBL/sub-0051582/surf/s22.mesh.area.resampled_32k.sub-0051582_T1w.gii
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+../../../.git/annex/objects/pj/9P/MD5E-s2265--e40c5246799de4495fff5a93aa3bf4b0.gii/MD5E-s2265--e40c5246799de4495fff5a93aa3bf4b0.gii

+ 1 - 0
SBL/sub-0051582/surf/s22.mesh.depth.resampled_32k.sub-0051582_T1w.dat
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+../../../.git/annex/objects/ZF/83/MD5E-s2599264--5e7d3cac9ff55c732f3adb0ff045ae82.dat/MD5E-s2599264--5e7d3cac9ff55c732f3adb0ff045ae82.dat

+ 1 - 0
SBL/sub-0051582/surf/s22.mesh.depth.resampled_32k.sub-0051582_T1w.gii
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+../../../.git/annex/objects/p6/vk/MD5E-s2269--f02b03cc7eeea60573679637a16fea93.gii/MD5E-s2269--f02b03cc7eeea60573679637a16fea93.gii

+ 1 - 0
SBL/sub-0051582/surf/s22.mesh.fractaldimension.resampled_32k.sub-0051582_T1w.dat
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+../../../.git/annex/objects/M2/47/MD5E-s2599264--3efe65ab4e039853eec3cc30b0fcc88c.dat/MD5E-s2599264--3efe65ab4e039853eec3cc30b0fcc88c.dat

+ 0 - 0
SBL/sub-0051582/surf/s22.mesh.fractaldimension.resampled_32k.sub-0051582_T1w.gii
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