[DATALAD RUNCMD] Compute Pitt/sub-0050010

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050010/anat/sub-0050010_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050010"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050010/label/catROI_sub-0050010_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mf/Ff/MD5E-s61222--169944425e6c5a3014edf64f42215652.mat/MD5E-s61222--169944425e6c5a3014edf64f42215652.mat

Pitt/sub-0050010/label/catROI_sub-0050010_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/4Q/3M/MD5E-s189428--bffc7ef97570513aebfff7feb9e5249f.xml/MD5E-s189428--bffc7ef97570513aebfff7feb9e5249f.xml

Pitt/sub-0050010/label/catROIs_sub-0050010_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/QK/wP/MD5E-s120269--9e8c81f47117bb103fa668e6d593a999.mat/MD5E-s120269--9e8c81f47117bb103fa668e6d593a999.mat

Pitt/sub-0050010/label/catROIs_sub-0050010_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/FQ/3M/MD5E-s332063--68875398c98dd23866d90c444e3c3ce8.xml/MD5E-s332063--68875398c98dd23866d90c444e3c3ce8.xml

Pitt/sub-0050010/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050010_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050010/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050010_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZK/42/MD5E-s126585--13b6c54fad9472e03c2fd5e80b883395.nii.gz/MD5E-s126585--13b6c54fad9472e03c2fd5e80b883395.nii.gz

Pitt/sub-0050010/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050010_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050010/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050010_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/73/mx/MD5E-s141646--85f4a4c3b92a16e91211a4dd3ff3650e.nii.gz/MD5E-s141646--85f4a4c3b92a16e91211a4dd3ff3650e.nii.gz

Pitt/sub-0050010/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050010_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050010/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050010_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vp/8Q/MD5E-s192516--510efc5f69fc75e123e12abf3d631339.nii.gz/MD5E-s192516--510efc5f69fc75e123e12abf3d631339.nii.gz

Pitt/sub-0050010/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050010_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050010/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050010_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V9/PM/MD5E-s212409--1b9757a70dcaff159b2a4fd3d387dc8c.nii.gz/MD5E-s212409--1b9757a70dcaff159b2a4fd3d387dc8c.nii.gz

Pitt/sub-0050010/mri/Tian_Subcortex_S2_7T_sub-0050010_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Pitt/sub-0050010/mri/Tian_Subcortex_S2_7T_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/aal3_sub-0050010_T1w.csv

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Pitt/sub-0050010/mri/aal3_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/anatomy3_sub-0050010_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050010/mri/anatomy3_sub-0050010_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050010/mri/anon_misub-0050010_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050010/mri/anon_msub-0050010_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pK/2f/MD5E-s8899696--d2622a58e6c58669188849cd66eede64.nii.gz/MD5E-s8899696--d2622a58e6c58669188849cd66eede64.nii.gz

Pitt/sub-0050010/mri/cat_sub-0050010_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q1/50/MD5E-s81421--10a7f1a951c268df100d0956b896a6e0.nii.gz/MD5E-s81421--10a7f1a951c268df100d0956b896a6e0.nii.gz

Pitt/sub-0050010/mri/cobra_sub-0050010_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050010/mri/cobra_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/hammers_sub-0050010_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050010/mri/hammers_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/ibsr_sub-0050010_T1w.csv

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Pitt/sub-0050010/mri/ibsr_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/it_sub-0050010_T1w_affine_reorient.mat

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Pitt/sub-0050010/mri/it_sub-0050010_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/5P/gP/MD5E-s284--631599d9c3edd8ec4fcb8443a343fa61.mat/MD5E-s284--631599d9c3edd8ec4fcb8443a343fa61.mat

Pitt/sub-0050010/mri/iy_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/julichbrain_sub-0050010_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Pitt/sub-0050010/mri/julichbrain_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/lpba40_sub-0050010_T1w.csv

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Pitt/sub-0050010/mri/lpba40_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/m0wp1sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/m0wp2sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/m0wp3sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/mori_sub-0050010_T1w.csv

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Pitt/sub-0050010/mri/mori_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/mwp1sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/mwp2sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/mwp3sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/neuromorphometrics_sub-0050010_T1w.csv

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Pitt/sub-0050010/mri/neuromorphometrics_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/p0sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/p1sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/p2sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/p3sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/rp1sub-0050010_T1w_affine.nii.gz

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Pitt/sub-0050010/mri/rp2sub-0050010_T1w_affine.nii.gz

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Pitt/sub-0050010/mri/rp3sub-0050010_T1w_affine.nii.gz

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Pitt/sub-0050010/mri/t_sub-0050010_T1w_affine_reorient.mat

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Pitt/sub-0050010/mri/t_sub-0050010_T1w_rigid_reorient.mat

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Pitt/sub-0050010/mri/thalamus_sub-0050010_T1w.csv

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Pitt/sub-0050010/mri/thalamus_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/wj_sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/wmisub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/wmsub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/wp0sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/wp1sub-0050010_T1w.nii.gz

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Pitt/sub-0050010/mri/wp2sub-0050010_T1w.nii.gz

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