[DATALAD RUNCMD] Compute USM/sub-0050515

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050515/anat/sub-0050515_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050515"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050515/label/catROI_sub-0050515_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qz/Kp/MD5E-s61451--4341635148d5817fd3452f87e9540bf5.mat/MD5E-s61451--4341635148d5817fd3452f87e9540bf5.mat

USM/sub-0050515/label/catROI_sub-0050515_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/qm/V9/MD5E-s189005--02e68995a28a76d7145e5bc8ebcc7f40.xml/MD5E-s189005--02e68995a28a76d7145e5bc8ebcc7f40.xml

USM/sub-0050515/label/catROIs_sub-0050515_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pV/xk/MD5E-s120144--18e702cae3cf05cd771cbec847cb06c5.mat/MD5E-s120144--18e702cae3cf05cd771cbec847cb06c5.mat

USM/sub-0050515/label/catROIs_sub-0050515_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/Q3/MD5E-s332150--ca39600404d52cedfea2695ed74f6c60.xml/MD5E-s332150--ca39600404d52cedfea2695ed74f6c60.xml

USM/sub-0050515/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050515/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qx/Qg/MD5E-s480896--9ceb339fbaec49f555f4ca1a825657c7.nii.gz/MD5E-s480896--9ceb339fbaec49f555f4ca1a825657c7.nii.gz

USM/sub-0050515/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050515/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f2/wg/MD5E-s537715--5dc9eadda5e54d1b47873c55fbeb2877.nii.gz/MD5E-s537715--5dc9eadda5e54d1b47873c55fbeb2877.nii.gz

USM/sub-0050515/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050515/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z5/35/MD5E-s754719--4fc09bc78a2ca48aa1cb7d55b78ce9df.nii.gz/MD5E-s754719--4fc09bc78a2ca48aa1cb7d55b78ce9df.nii.gz

USM/sub-0050515/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050515/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3g/wG/MD5E-s832483--77d8a47c850959c0261fbe3c3e24e080.nii.gz/MD5E-s832483--77d8a47c850959c0261fbe3c3e24e080.nii.gz

USM/sub-0050515/mri/Tian_Subcortex_S2_7T_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050515/mri/Tian_Subcortex_S2_7T_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/16/j3/MD5E-s74719--98f5f51f6e29e2ab319eca8fb1bfc406.nii.gz/MD5E-s74719--98f5f51f6e29e2ab319eca8fb1bfc406.nii.gz

USM/sub-0050515/mri/aal3_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050515/mri/aal3_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g2/J2/MD5E-s542220--9280926a71b0c5a0d6912e9b34e3b16e.nii.gz/MD5E-s542220--9280926a71b0c5a0d6912e9b34e3b16e.nii.gz

USM/sub-0050515/mri/anatomy3_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050515/mri/anatomy3_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XG/21/MD5E-s399566--a0931b96c292a398b44740d5207f5718.nii.gz/MD5E-s399566--a0931b96c292a398b44740d5207f5718.nii.gz

USM/sub-0050515/mri/anon_misub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z7/Z2/MD5E-s19086492--a8a36abfc5c22d35340cd8a07a5c1a5b.nii.gz/MD5E-s19086492--a8a36abfc5c22d35340cd8a07a5c1a5b.nii.gz

USM/sub-0050515/mri/anon_msub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8F/q4/MD5E-s32964253--4b1950ec5a59c6e1f965b1e099d75cad.nii.gz/MD5E-s32964253--4b1950ec5a59c6e1f965b1e099d75cad.nii.gz

USM/sub-0050515/mri/cat_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kW/g1/MD5E-s242095--2a0b10e619e227b01f59e5b450894a84.nii.gz/MD5E-s242095--2a0b10e619e227b01f59e5b450894a84.nii.gz

USM/sub-0050515/mri/cobra_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050515/mri/cobra_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PF/Zm/MD5E-s146097--02eca59fb9962ed9dce3beabe226ccdc.nii.gz/MD5E-s146097--02eca59fb9962ed9dce3beabe226ccdc.nii.gz

USM/sub-0050515/mri/hammers_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050515/mri/hammers_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vv/XJ/MD5E-s427436--4ad83ba64127153af55de15634333ce7.nii.gz/MD5E-s427436--4ad83ba64127153af55de15634333ce7.nii.gz

USM/sub-0050515/mri/ibsr_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050515/mri/ibsr_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VV/2p/MD5E-s464363--79e29a042eb692833c035bd563b67828.nii.gz/MD5E-s464363--79e29a042eb692833c035bd563b67828.nii.gz

USM/sub-0050515/mri/it_sub-0050515_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/5m/79/MD5E-s283--b964bc75384a1d6a50d61c4ed1a1f510.mat/MD5E-s283--b964bc75384a1d6a50d61c4ed1a1f510.mat

USM/sub-0050515/mri/it_sub-0050515_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gZ/2k/MD5E-s283--a9db311dff3872d822b744b9671b092c.mat/MD5E-s283--a9db311dff3872d822b744b9671b092c.mat

USM/sub-0050515/mri/iy_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/46/0k/MD5E-s160569856--3528a83d94f16d46d3852ccc43482bcf.nii.gz/MD5E-s160569856--3528a83d94f16d46d3852ccc43482bcf.nii.gz

USM/sub-0050515/mri/julichbrain_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050515/mri/julichbrain_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W4/GX/MD5E-s575670--c890bd7eca22620c40055041c78ecd1d.nii.gz/MD5E-s575670--c890bd7eca22620c40055041c78ecd1d.nii.gz

USM/sub-0050515/mri/lpba40_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050515/mri/lpba40_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9M/X9/MD5E-s416601--fe360e37fdbb8b5c172a925213f0bb3c.nii.gz/MD5E-s416601--fe360e37fdbb8b5c172a925213f0bb3c.nii.gz

USM/sub-0050515/mri/m0wp1sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3K/Xx/MD5E-s2542331--f40debf093708d2284674a77910d7bb3.nii.gz/MD5E-s2542331--f40debf093708d2284674a77910d7bb3.nii.gz

USM/sub-0050515/mri/m0wp2sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X6/Qg/MD5E-s2264891--8ca480845f7396e57cdd0dea7445ed88.nii.gz/MD5E-s2264891--8ca480845f7396e57cdd0dea7445ed88.nii.gz

USM/sub-0050515/mri/m0wp3sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jK/Vk/MD5E-s2411364--d27f31176c0fd0f768f7c0b33d6f57bf.nii.gz/MD5E-s2411364--d27f31176c0fd0f768f7c0b33d6f57bf.nii.gz

USM/sub-0050515/mri/mori_sub-0050515_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050515/mri/mori_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1w/z4/MD5E-s491868--e6dcd0bc4eada457decb680a35fa58b1.nii.gz/MD5E-s491868--e6dcd0bc4eada457decb680a35fa58b1.nii.gz

USM/sub-0050515/mri/mwp1sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/67/g5/MD5E-s2544055--7235f53f99dca834e9e033c02f01ed03.nii.gz/MD5E-s2544055--7235f53f99dca834e9e033c02f01ed03.nii.gz

USM/sub-0050515/mri/mwp2sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k6/P5/MD5E-s2260638--f917809f22de85ae116790caa39043d7.nii.gz/MD5E-s2260638--f917809f22de85ae116790caa39043d7.nii.gz

USM/sub-0050515/mri/mwp3sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gv/w9/MD5E-s2411370--9173eb9e07a95c0b609e8ec0c8becc15.nii.gz/MD5E-s2411370--9173eb9e07a95c0b609e8ec0c8becc15.nii.gz

USM/sub-0050515/mri/neuromorphometrics_sub-0050515_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

USM/sub-0050515/mri/neuromorphometrics_sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W7/8p/MD5E-s593376--194cc7bcb9a32b5bf3cf47322ac093e7.nii.gz/MD5E-s593376--194cc7bcb9a32b5bf3cf47322ac093e7.nii.gz

USM/sub-0050515/mri/p0sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050515/mri/p1sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M9/kG/MD5E-s3106733--d5f4e5bbeacb80a4065d1386ca2727fe.nii.gz/MD5E-s3106733--d5f4e5bbeacb80a4065d1386ca2727fe.nii.gz

USM/sub-0050515/mri/p2sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050515/mri/p3sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050515/mri/rp1sub-0050515_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KQ/9X/MD5E-s395174--fbaaa3e15e663e4cd2609bafc2cc19cc.nii.gz/MD5E-s395174--fbaaa3e15e663e4cd2609bafc2cc19cc.nii.gz

USM/sub-0050515/mri/rp2sub-0050515_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8F/FJ/MD5E-s267397--0e0d97fe44fb1a9e3be7fd52800e3cd3.nii.gz/MD5E-s267397--0e0d97fe44fb1a9e3be7fd52800e3cd3.nii.gz

USM/sub-0050515/mri/rp3sub-0050515_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w5/vm/MD5E-s235700--4342547c04085345f5ff14f44fb4ef57.nii.gz/MD5E-s235700--4342547c04085345f5ff14f44fb4ef57.nii.gz

USM/sub-0050515/mri/t_sub-0050515_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/92/2G/MD5E-s284--ff40ddadb4fed4a07e1015af52d20c9b.mat/MD5E-s284--ff40ddadb4fed4a07e1015af52d20c9b.mat

USM/sub-0050515/mri/t_sub-0050515_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/jM/Z9/MD5E-s281--ee68bbd220060dae9e80e4cb85d05a7a.mat/MD5E-s281--ee68bbd220060dae9e80e4cb85d05a7a.mat

USM/sub-0050515/mri/thalamus_sub-0050515_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050515/mri/thalamus_sub-0050515_T1w.nii.gz

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USM/sub-0050515/mri/wj_sub-0050515_T1w.nii.gz

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USM/sub-0050515/mri/wmisub-0050515_T1w.nii.gz

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USM/sub-0050515/mri/wmsub-0050515_T1w.nii.gz

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USM/sub-0050515/mri/wp0sub-0050515_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050515/mri/wp1sub-0050515_T1w.nii.gz

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USM/sub-0050515/mri/wp2sub-0050515_T1w.nii.gz

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USM/sub-0050515/mri/wp3sub-0050515_T1w.nii.gz

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