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[DATALAD RUNCMD] Compute USM/sub-0050458

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050458/anat/sub-0050458_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050458"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
Felix Hoffstaedter 6 miesięcy temu
rodzic
8c4b7e5e26
commit
3a99316f1a
100 zmienionych plików z 99 dodań i 0 usunięć
Widok podzielony Pokaż statystyki zmian
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      USM/sub-0050458/label/catROI_sub-0050458_T1w.mat
  2. 1 0
      USM/sub-0050458/label/catROI_sub-0050458_T1w.xml
  3. 1 0
      USM/sub-0050458/label/catROIs_sub-0050458_T1w.mat
  4. 1 0
      USM/sub-0050458/label/catROIs_sub-0050458_T1w.xml
  5. 1 0
      USM/sub-0050458/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050458_T1w.csv
  6. 1 0
      USM/sub-0050458/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050458_T1w.nii.gz
  7. 1 0
      USM/sub-0050458/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050458_T1w.csv
  8. 1 0
      USM/sub-0050458/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050458_T1w.nii.gz
  9. 1 0
      USM/sub-0050458/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050458_T1w.csv
  10. 1 0
      USM/sub-0050458/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050458_T1w.nii.gz
  11. 1 0
      USM/sub-0050458/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050458_T1w.csv
  12. 1 0
      USM/sub-0050458/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050458_T1w.nii.gz
  13. 1 0
      USM/sub-0050458/mri/Tian_Subcortex_S2_7T_sub-0050458_T1w.csv
  14. 1 0
      USM/sub-0050458/mri/Tian_Subcortex_S2_7T_sub-0050458_T1w.nii.gz
  15. 1 0
      USM/sub-0050458/mri/aal3_sub-0050458_T1w.csv
  16. 1 0
      USM/sub-0050458/mri/aal3_sub-0050458_T1w.nii.gz
  17. 1 0
      USM/sub-0050458/mri/anatomy3_sub-0050458_T1w.csv
  18. 1 0
      USM/sub-0050458/mri/anatomy3_sub-0050458_T1w.nii.gz
  19. 1 0
      USM/sub-0050458/mri/anon_misub-0050458_T1w.nii.gz
  20. 1 0
      USM/sub-0050458/mri/anon_msub-0050458_T1w.nii.gz
  21. 1 0
      USM/sub-0050458/mri/cat_sub-0050458_T1w.nii.gz
  22. 1 0
      USM/sub-0050458/mri/cobra_sub-0050458_T1w.csv
  23. 1 0
      USM/sub-0050458/mri/cobra_sub-0050458_T1w.nii.gz
  24. 1 0
      USM/sub-0050458/mri/hammers_sub-0050458_T1w.csv
  25. 1 0
      USM/sub-0050458/mri/hammers_sub-0050458_T1w.nii.gz
  26. 1 0
      USM/sub-0050458/mri/ibsr_sub-0050458_T1w.csv
  27. 1 0
      USM/sub-0050458/mri/ibsr_sub-0050458_T1w.nii.gz
  28. 1 0
      USM/sub-0050458/mri/it_sub-0050458_T1w_affine_reorient.mat
  29. 1 0
      USM/sub-0050458/mri/it_sub-0050458_T1w_rigid_reorient.mat
  30. 1 0
      USM/sub-0050458/mri/iy_sub-0050458_T1w.nii.gz
  31. 1 0
      USM/sub-0050458/mri/julichbrain_sub-0050458_T1w.csv
  32. 1 0
      USM/sub-0050458/mri/julichbrain_sub-0050458_T1w.nii.gz
  33. 1 0
      USM/sub-0050458/mri/lpba40_sub-0050458_T1w.csv
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      USM/sub-0050458/mri/lpba40_sub-0050458_T1w.nii.gz
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      USM/sub-0050458/mri/m0wp1sub-0050458_T1w.nii.gz
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  43. 1 0
      USM/sub-0050458/mri/neuromorphometrics_sub-0050458_T1w.csv
  44. 1 0
      USM/sub-0050458/mri/neuromorphometrics_sub-0050458_T1w.nii.gz
  45. 1 0
      USM/sub-0050458/mri/p0sub-0050458_T1w.nii.gz
  46. 1 0
      USM/sub-0050458/mri/p1sub-0050458_T1w.nii.gz
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      USM/sub-0050458/mri/p2sub-0050458_T1w.nii.gz
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      USM/sub-0050458/mri/p3sub-0050458_T1w.nii.gz
  49. 1 0
      USM/sub-0050458/mri/rp1sub-0050458_T1w_affine.nii.gz
  50. 1 0
      USM/sub-0050458/mri/rp2sub-0050458_T1w_affine.nii.gz
  51. 1 0
      USM/sub-0050458/mri/rp3sub-0050458_T1w_affine.nii.gz
  52. 1 0
      USM/sub-0050458/mri/t_sub-0050458_T1w_affine_reorient.mat
  53. 1 0
      USM/sub-0050458/mri/t_sub-0050458_T1w_rigid_reorient.mat
  54. 1 0
      USM/sub-0050458/mri/thalamus_sub-0050458_T1w.csv
  55. 1 0
      USM/sub-0050458/mri/thalamus_sub-0050458_T1w.nii.gz
  56. 1 0
      USM/sub-0050458/mri/wj_sub-0050458_T1w.nii.gz
  57. 1 0
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  59. 1 0
      USM/sub-0050458/mri/wp0sub-0050458_T1w.nii.gz
  60. 1 0
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  63. 1 0
      USM/sub-0050458/mri/y_sub-0050458_T1w.nii.gz
  64. 1 0
      USM/sub-0050458/report/cat_sub-0050458_T1w.mat
  65. 1 0
      USM/sub-0050458/report/cat_sub-0050458_T1w.xml
  66. 1 0
      USM/sub-0050458/report/catlog_sub-0050458_T1w.nii.txt
  67. 1 0
      USM/sub-0050458/report/catreport_sub-0050458_T1w.pdf
  68. 1 0
      USM/sub-0050458/report/catreportj_sub-0050458_T1w.jpg
  69. 1 0
      USM/sub-0050458/surf/lh.area.sub-0050458_T1w
  70. 1 0
      USM/sub-0050458/surf/lh.central.sub-0050458_T1w.gii
  71. 1 0
      USM/sub-0050458/surf/lh.depth.sub-0050458_T1w
  72. 1 0
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  73. 1 0
      USM/sub-0050458/surf/lh.fractaldimension.sub-0050458_T1w
  74. 1 0
      USM/sub-0050458/surf/lh.gmv.sub-0050458_T1w
  75. 1 0
      USM/sub-0050458/surf/lh.gyrification.sub-0050458_T1w
  76. 1 0
      USM/sub-0050458/surf/lh.pbt.sub-0050458_T1w
  77. 1 0
      USM/sub-0050458/surf/lh.sphere.reg.sub-0050458_T1w.gii
  78. 1 0
      USM/sub-0050458/surf/lh.sphere.sub-0050458_T1w.gii
  79. 1 0
      USM/sub-0050458/surf/lh.thickness.sub-0050458_T1w
  80. 1 0
      USM/sub-0050458/surf/lh.toroGI20mm.sub-0050458_T1w
  81. 1 0
      USM/sub-0050458/surf/rh.area.sub-0050458_T1w
  82. 1 0
      USM/sub-0050458/surf/rh.central.sub-0050458_T1w.gii
  83. 1 0
      USM/sub-0050458/surf/rh.depth.sub-0050458_T1w
  84. 1 0
      USM/sub-0050458/surf/rh.edgemap32k.sub-0050458_T1w.mat
  85. 1 0
      USM/sub-0050458/surf/rh.fractaldimension.sub-0050458_T1w
  86. 1 0
      USM/sub-0050458/surf/rh.gmv.sub-0050458_T1w
  87. 1 0
      USM/sub-0050458/surf/rh.gyrification.sub-0050458_T1w
  88. 1 0
      USM/sub-0050458/surf/rh.pbt.sub-0050458_T1w
  89. 1 0
      USM/sub-0050458/surf/rh.sphere.reg.sub-0050458_T1w.gii
  90. 1 0
      USM/sub-0050458/surf/rh.sphere.sub-0050458_T1w.gii
  91. 1 0
      USM/sub-0050458/surf/rh.thickness.sub-0050458_T1w
  92. 1 0
      USM/sub-0050458/surf/rh.toroGI20mm.sub-0050458_T1w
  93. 1 0
      USM/sub-0050458/surf/s12.mesh.thickness.resampled_32k.sub-0050458_T1w.dat
  94. 1 0
      USM/sub-0050458/surf/s12.mesh.thickness.resampled_32k.sub-0050458_T1w.gii
  95. 1 0
      USM/sub-0050458/surf/s22.mesh.area.resampled_32k.sub-0050458_T1w.dat
  96. 1 0
      USM/sub-0050458/surf/s22.mesh.area.resampled_32k.sub-0050458_T1w.gii
  97. 1 0
      USM/sub-0050458/surf/s22.mesh.depth.resampled_32k.sub-0050458_T1w.dat
  98. 1 0
      USM/sub-0050458/surf/s22.mesh.depth.resampled_32k.sub-0050458_T1w.gii
  99. 1 0
      USM/sub-0050458/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050458_T1w.dat
  100. 0 0
      USM/sub-0050458/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050458_T1w.gii

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USM/sub-0050458/label/catROI_sub-0050458_T1w.mat
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+../../../.git/annex/objects/pq/GP/MD5E-s61384--63d88e744202d7110250cfeb57e157e3.mat/MD5E-s61384--63d88e744202d7110250cfeb57e157e3.mat

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USM/sub-0050458/label/catROI_sub-0050458_T1w.xml
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+../../../.git/annex/objects/Z0/6f/MD5E-s189093--b39f66905412a000e28787d8f3b2dd4d.xml/MD5E-s189093--b39f66905412a000e28787d8f3b2dd4d.xml

+ 1 - 0
USM/sub-0050458/label/catROIs_sub-0050458_T1w.mat
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+../../../.git/annex/objects/62/gJ/MD5E-s119938--d548a83d34cbe9fb81037e6c51fd97a4.mat/MD5E-s119938--d548a83d34cbe9fb81037e6c51fd97a4.mat

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USM/sub-0050458/label/catROIs_sub-0050458_T1w.xml
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+../../../.git/annex/objects/fq/5J/MD5E-s332153--cd77c3270b2f784679c2b6c06b02ac49.xml/MD5E-s332153--cd77c3270b2f784679c2b6c06b02ac49.xml

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USM/sub-0050458/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050458_T1w.csv
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+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

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USM/sub-0050458/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050458_T1w.nii.gz
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+../../../.git/annex/objects/wZ/z0/MD5E-s389115--52b31fd05024bd142394af8ca00daae5.nii.gz/MD5E-s389115--52b31fd05024bd142394af8ca00daae5.nii.gz

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USM/sub-0050458/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050458_T1w.csv
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+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

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USM/sub-0050458/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050458_T1w.nii.gz
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+../../../.git/annex/objects/wM/Xg/MD5E-s432515--5cfc03b44d872b44bb31314c6c654ac6.nii.gz/MD5E-s432515--5cfc03b44d872b44bb31314c6c654ac6.nii.gz

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USM/sub-0050458/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050458_T1w.csv
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+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

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USM/sub-0050458/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050458_T1w.nii.gz
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+../../../.git/annex/objects/39/gf/MD5E-s625164--daf366ab372152084a6eee79871e7417.nii.gz/MD5E-s625164--daf366ab372152084a6eee79871e7417.nii.gz

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USM/sub-0050458/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050458_T1w.csv
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+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

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USM/sub-0050458/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050458_T1w.nii.gz
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+../../../.git/annex/objects/Zm/9F/MD5E-s686317--38b1da9a2a1bc3538f1f7f7fed338806.nii.gz/MD5E-s686317--38b1da9a2a1bc3538f1f7f7fed338806.nii.gz

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USM/sub-0050458/mri/Tian_Subcortex_S2_7T_sub-0050458_T1w.csv
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+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

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USM/sub-0050458/mri/Tian_Subcortex_S2_7T_sub-0050458_T1w.nii.gz
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+../../../.git/annex/objects/KJ/Jj/MD5E-s67939--36506ac1aedf8c6528a8455d448cbd21.nii.gz/MD5E-s67939--36506ac1aedf8c6528a8455d448cbd21.nii.gz

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USM/sub-0050458/mri/aal3_sub-0050458_T1w.csv
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+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

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USM/sub-0050458/mri/aal3_sub-0050458_T1w.nii.gz
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+../../../.git/annex/objects/VP/VF/MD5E-s443153--b6b19f36cf96f1b5f17535e5cfb194ab.nii.gz/MD5E-s443153--b6b19f36cf96f1b5f17535e5cfb194ab.nii.gz

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USM/sub-0050458/mri/anatomy3_sub-0050458_T1w.csv
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+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

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USM/sub-0050458/mri/anatomy3_sub-0050458_T1w.nii.gz
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+../../../.git/annex/objects/8F/1w/MD5E-s326780--3610fceb6e2d4e3e09e223a3a53d1dbb.nii.gz/MD5E-s326780--3610fceb6e2d4e3e09e223a3a53d1dbb.nii.gz

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USM/sub-0050458/mri/anon_misub-0050458_T1w.nii.gz
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+../../../.git/annex/objects/8z/QQ/MD5E-s19925840--6a03e4eb38dd869d0e83faa9497244df.nii.gz/MD5E-s19925840--6a03e4eb38dd869d0e83faa9497244df.nii.gz

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USM/sub-0050458/mri/anon_msub-0050458_T1w.nii.gz
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+../../../.git/annex/objects/96/4V/MD5E-s43045611--95043974a09cb075b795fe6db90a1fd4.nii.gz/MD5E-s43045611--95043974a09cb075b795fe6db90a1fd4.nii.gz

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USM/sub-0050458/mri/cat_sub-0050458_T1w.nii.gz
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+../../../.git/annex/objects/kK/7M/MD5E-s244203--a297e196d979432c248fab328c23d45e.nii.gz/MD5E-s244203--a297e196d979432c248fab328c23d45e.nii.gz

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USM/sub-0050458/mri/cobra_sub-0050458_T1w.csv
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USM/sub-0050458/mri/cobra_sub-0050458_T1w.nii.gz
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+../../../.git/annex/objects/0w/4j/MD5E-s126352--adfa56c4615572fa93e81e174479688d.nii.gz/MD5E-s126352--adfa56c4615572fa93e81e174479688d.nii.gz

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USM/sub-0050458/mri/hammers_sub-0050458_T1w.csv
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+../../../.git/annex/objects/pX/9p/MD5E-s349869--436342de65d9d3317133b0fcbee7e09b.nii.gz/MD5E-s349869--436342de65d9d3317133b0fcbee7e09b.nii.gz

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+../../../.git/annex/objects/xx/WK/MD5E-s356891--98bd600bf6777b950a123b2262a89634/MD5E-s356891--98bd600bf6777b950a123b2262a89634

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USM/sub-0050458/surf/rh.gyrification.sub-0050458_T1w
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+../../../.git/annex/objects/5Q/xQ/MD5E-s356891--204bcd30b7019217bcde2288741739ec/MD5E-s356891--204bcd30b7019217bcde2288741739ec

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USM/sub-0050458/surf/rh.pbt.sub-0050458_T1w
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+../../../.git/annex/objects/QX/Qk/MD5E-s356891--1e52222e6bd55e8e4f022d5544290eca/MD5E-s356891--1e52222e6bd55e8e4f022d5544290eca

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USM/sub-0050458/surf/rh.sphere.reg.sub-0050458_T1w.gii
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+../../../.git/annex/objects/pq/4P/MD5E-s4285146--871ed58597d5b4c5501475176d3767ad.gii/MD5E-s4285146--871ed58597d5b4c5501475176d3767ad.gii

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USM/sub-0050458/surf/rh.sphere.sub-0050458_T1w.gii
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+../../../.git/annex/objects/0M/0J/MD5E-s4285134--4a7d1c55188cf958b50a648d2a18c22e.gii/MD5E-s4285134--4a7d1c55188cf958b50a648d2a18c22e.gii

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USM/sub-0050458/surf/rh.thickness.sub-0050458_T1w
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+../../../.git/annex/objects/VP/4v/MD5E-s356891--99726f9af87f3e8500f2ea3acd8ca6bb/MD5E-s356891--99726f9af87f3e8500f2ea3acd8ca6bb

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USM/sub-0050458/surf/rh.toroGI20mm.sub-0050458_T1w
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+../../../.git/annex/objects/vz/76/MD5E-s356891--4d5e6c3a9a938e990d03e43613c09176/MD5E-s356891--4d5e6c3a9a938e990d03e43613c09176

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USM/sub-0050458/surf/s12.mesh.thickness.resampled_32k.sub-0050458_T1w.dat
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+../../../.git/annex/objects/WJ/QG/MD5E-s2599264--958f691ab223ed7aa04d4ddc62d7c3d7.dat/MD5E-s2599264--958f691ab223ed7aa04d4ddc62d7c3d7.dat

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USM/sub-0050458/surf/s12.mesh.thickness.resampled_32k.sub-0050458_T1w.gii
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+../../../.git/annex/objects/4m/FP/MD5E-s2285--0e6c006112d701b48a07d368a4c10ec8.gii/MD5E-s2285--0e6c006112d701b48a07d368a4c10ec8.gii

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USM/sub-0050458/surf/s22.mesh.area.resampled_32k.sub-0050458_T1w.dat
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+../../../.git/annex/objects/7k/m6/MD5E-s2599264--eb6a026479902e8a264c861b82fe2a6b.dat/MD5E-s2599264--eb6a026479902e8a264c861b82fe2a6b.dat

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USM/sub-0050458/surf/s22.mesh.area.resampled_32k.sub-0050458_T1w.gii
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+../../../.git/annex/objects/40/44/MD5E-s2265--b5868260ce8abcc107c9cfa75b6bd130.gii/MD5E-s2265--b5868260ce8abcc107c9cfa75b6bd130.gii

+ 1 - 0
USM/sub-0050458/surf/s22.mesh.depth.resampled_32k.sub-0050458_T1w.dat
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+../../../.git/annex/objects/M8/FV/MD5E-s2599264--4e1e525be40ca23bcf1de76b1b283d39.dat/MD5E-s2599264--4e1e525be40ca23bcf1de76b1b283d39.dat

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USM/sub-0050458/surf/s22.mesh.depth.resampled_32k.sub-0050458_T1w.gii
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+../../../.git/annex/objects/Fj/0m/MD5E-s2269--1d8209a9307883de59c2da0c02d8ac6d.gii/MD5E-s2269--1d8209a9307883de59c2da0c02d8ac6d.gii

+ 1 - 0
USM/sub-0050458/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050458_T1w.dat
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+../../../.git/annex/objects/vZ/3k/MD5E-s2599264--9f97f4f7e593f3772eaf8649d4ead887.dat/MD5E-s2599264--9f97f4f7e593f3772eaf8649d4ead887.dat

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USM/sub-0050458/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050458_T1w.gii
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