[DATALAD RUNCMD] Compute UM_2/sub-0050403

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050403/anat/sub-0050403_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050403"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050403/label/catROI_sub-0050403_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8Q/FV/MD5E-s58624--12c49872b7274c252296c72035675cde.mat/MD5E-s58624--12c49872b7274c252296c72035675cde.mat

UM_2/sub-0050403/label/catROI_sub-0050403_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9K/g0/MD5E-s188773--85df65132cd15a37ceb26ce64945a924.xml/MD5E-s188773--85df65132cd15a37ceb26ce64945a924.xml

UM_2/sub-0050403/label/catROIs_sub-0050403_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/KW/M4/MD5E-s120032--ce41aa4e2c1cfdf4536127e051ed508b.mat/MD5E-s120032--ce41aa4e2c1cfdf4536127e051ed508b.mat

UM_2/sub-0050403/label/catROIs_sub-0050403_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/7W/0P/MD5E-s332118--3290905ab1020d9ac61c9e2969b851f6.xml/MD5E-s332118--3290905ab1020d9ac61c9e2969b851f6.xml

UM_2/sub-0050403/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050403_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050403/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0j/p8/MD5E-s146425--eb5c324d0b9bcbe8817268270e99eae3.nii.gz/MD5E-s146425--eb5c324d0b9bcbe8817268270e99eae3.nii.gz

UM_2/sub-0050403/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050403_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050403/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gw/5Z/MD5E-s163562--f0e9b60a7d90078290786854fcb85f0a.nii.gz/MD5E-s163562--f0e9b60a7d90078290786854fcb85f0a.nii.gz

UM_2/sub-0050403/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050403_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050403/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WP/Pv/MD5E-s223188--fa5f722bfa0e398cb6530352c29576e9.nii.gz/MD5E-s223188--fa5f722bfa0e398cb6530352c29576e9.nii.gz

UM_2/sub-0050403/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050403_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050403/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x5/xv/MD5E-s248685--9874e764b65d4d569fcdf032f7fd6481.nii.gz/MD5E-s248685--9874e764b65d4d569fcdf032f7fd6481.nii.gz

UM_2/sub-0050403/mri/Tian_Subcortex_S2_7T_sub-0050403_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050403/mri/Tian_Subcortex_S2_7T_sub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kF/0w/MD5E-s17371--8500faab8b401a1eaafe000864275534.nii.gz/MD5E-s17371--8500faab8b401a1eaafe000864275534.nii.gz

UM_2/sub-0050403/mri/aal3_sub-0050403_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050403/mri/aal3_sub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050403/mri/anatomy3_sub-0050403_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050403/mri/anatomy3_sub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8J/Vm/MD5E-s113367--bfb2d5edca93c71d7166e7db7108e620.nii.gz/MD5E-s113367--bfb2d5edca93c71d7166e7db7108e620.nii.gz

UM_2/sub-0050403/mri/anon_misub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050403/mri/anon_msub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3q/J7/MD5E-s5925004--5bab8885fa05d59f16ca96b3eaf6917c.nii.gz/MD5E-s5925004--5bab8885fa05d59f16ca96b3eaf6917c.nii.gz

UM_2/sub-0050403/mri/cat_sub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/59/zx/MD5E-s84382--cba314206e139c58dc641a4218c4bdb3.nii.gz/MD5E-s84382--cba314206e139c58dc641a4218c4bdb3.nii.gz

UM_2/sub-0050403/mri/cobra_sub-0050403_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050403/mri/cobra_sub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XG/vz/MD5E-s37388--81f0931e69412617ac09d99a38925c2c.nii.gz/MD5E-s37388--81f0931e69412617ac09d99a38925c2c.nii.gz

UM_2/sub-0050403/mri/hammers_sub-0050403_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050403/mri/hammers_sub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8W/5w/MD5E-s124975--540fa65726ef91c8392a1a67e456597e.nii.gz/MD5E-s124975--540fa65726ef91c8392a1a67e456597e.nii.gz

UM_2/sub-0050403/mri/ibsr_sub-0050403_T1w.csv

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UM_2/sub-0050403/mri/ibsr_sub-0050403_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050403/mri/it_sub-0050403_T1w_affine_reorient.mat

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+../../../.git/annex/objects/x4/6q/MD5E-s285--dfb4a89c2d8f58a5aaae39f05a2d6b18.mat/MD5E-s285--dfb4a89c2d8f58a5aaae39f05a2d6b18.mat

UM_2/sub-0050403/mri/it_sub-0050403_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/g8/1q/MD5E-s284--1138b085aaa9e46aa3b357ecc18e587b.mat/MD5E-s284--1138b085aaa9e46aa3b357ecc18e587b.mat

UM_2/sub-0050403/mri/iy_sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/julichbrain_sub-0050403_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_2/sub-0050403/mri/julichbrain_sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/lpba40_sub-0050403_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050403/mri/lpba40_sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/m0wp1sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/m0wp2sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/m0wp3sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/mori_sub-0050403_T1w.csv

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UM_2/sub-0050403/mri/mori_sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/mwp1sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/mwp2sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/mwp3sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/neuromorphometrics_sub-0050403_T1w.csv

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UM_2/sub-0050403/mri/neuromorphometrics_sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/p0sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/p1sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/p2sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/p3sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/rp1sub-0050403_T1w_affine.nii.gz

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UM_2/sub-0050403/mri/rp2sub-0050403_T1w_affine.nii.gz

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UM_2/sub-0050403/mri/rp3sub-0050403_T1w_affine.nii.gz

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UM_2/sub-0050403/mri/t_sub-0050403_T1w_affine_reorient.mat

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UM_2/sub-0050403/mri/t_sub-0050403_T1w_rigid_reorient.mat

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UM_2/sub-0050403/mri/thalamus_sub-0050403_T1w.csv

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UM_2/sub-0050403/mri/thalamus_sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/wj_sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/wmisub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/wmsub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/wp0sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/wp1sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/wp2sub-0050403_T1w.nii.gz

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UM_2/sub-0050403/mri/wp3sub-0050403_T1w.nii.gz

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