[DATALAD RUNCMD] Compute UM_2/sub-0050421

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050421/anat/sub-0050421_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050421"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050421/label/catROI_sub-0050421_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vv/Z0/MD5E-s58242--bee674ba1d987d45c008eb3758424162.mat/MD5E-s58242--bee674ba1d987d45c008eb3758424162.mat

UM_2/sub-0050421/label/catROI_sub-0050421_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/j2/35/MD5E-s188924--263bfad4649d29b6b141c5a4754934bb.xml/MD5E-s188924--263bfad4649d29b6b141c5a4754934bb.xml

UM_2/sub-0050421/label/catROIs_sub-0050421_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zF/m1/MD5E-s120106--20e6ae0e147e21a000ee646c6d32f797.mat/MD5E-s120106--20e6ae0e147e21a000ee646c6d32f797.mat

UM_2/sub-0050421/label/catROIs_sub-0050421_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/21/01/MD5E-s332151--5b9d3c574a03495d0e49215a50b17e8a.xml/MD5E-s332151--5b9d3c574a03495d0e49215a50b17e8a.xml

UM_2/sub-0050421/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050421/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050421_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qx/p2/MD5E-s133866--2f437e73c3e620964a8f67145ee0477f.nii.gz/MD5E-s133866--2f437e73c3e620964a8f67145ee0477f.nii.gz

UM_2/sub-0050421/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050421/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050421_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z4/g2/MD5E-s149442--bf194a36b523585c6b2e69a4e5638b8a.nii.gz/MD5E-s149442--bf194a36b523585c6b2e69a4e5638b8a.nii.gz

UM_2/sub-0050421/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050421/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050421_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5X/5F/MD5E-s207646--71c861c7f283f5773ff662a7790d858a.nii.gz/MD5E-s207646--71c861c7f283f5773ff662a7790d858a.nii.gz

UM_2/sub-0050421/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050421/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050421_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PQ/wM/MD5E-s229326--fda311638a473622b5e9621ced7c99da.nii.gz/MD5E-s229326--fda311638a473622b5e9621ced7c99da.nii.gz

UM_2/sub-0050421/mri/Tian_Subcortex_S2_7T_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050421/mri/Tian_Subcortex_S2_7T_sub-0050421_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XX/8G/MD5E-s16202--c884da2efa54c9c96ba111da05acb922.nii.gz/MD5E-s16202--c884da2efa54c9c96ba111da05acb922.nii.gz

UM_2/sub-0050421/mri/aal3_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_2/sub-0050421/mri/aal3_sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/anatomy3_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_2/sub-0050421/mri/anatomy3_sub-0050421_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/69/f3/MD5E-s106367--b9779e9505539004e770a7c35236dfda.nii.gz/MD5E-s106367--b9779e9505539004e770a7c35236dfda.nii.gz

UM_2/sub-0050421/mri/anon_misub-0050421_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jP/8z/MD5E-s3801364--acb6b78b7140b0022500c422a684ca42.nii.gz/MD5E-s3801364--acb6b78b7140b0022500c422a684ca42.nii.gz

UM_2/sub-0050421/mri/anon_msub-0050421_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mg/Gf/MD5E-s5763439--9c668b59eceae68b5ae75e041adbac2e.nii.gz/MD5E-s5763439--9c668b59eceae68b5ae75e041adbac2e.nii.gz

UM_2/sub-0050421/mri/cat_sub-0050421_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mQ/mp/MD5E-s76958--9dcd8d774f667ed0c2b4300829c1fea7.nii.gz/MD5E-s76958--9dcd8d774f667ed0c2b4300829c1fea7.nii.gz

UM_2/sub-0050421/mri/cobra_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050421/mri/cobra_sub-0050421_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050421/mri/hammers_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050421/mri/hammers_sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/ibsr_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UM_2/sub-0050421/mri/ibsr_sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/it_sub-0050421_T1w_affine_reorient.mat

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+../../../.git/annex/objects/8Q/x5/MD5E-s283--c8b38c73322ab5048f642d4792182686.mat/MD5E-s283--c8b38c73322ab5048f642d4792182686.mat

UM_2/sub-0050421/mri/it_sub-0050421_T1w_rigid_reorient.mat

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UM_2/sub-0050421/mri/iy_sub-0050421_T1w.nii.gz

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+../../../.git/annex/objects/gm/41/MD5E-s32005551--15d2918981c3e30fd1d44a56632a0269.nii.gz/MD5E-s32005551--15d2918981c3e30fd1d44a56632a0269.nii.gz

UM_2/sub-0050421/mri/julichbrain_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_2/sub-0050421/mri/julichbrain_sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/lpba40_sub-0050421_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_2/sub-0050421/mri/lpba40_sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/m0wp1sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/m0wp2sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/m0wp3sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/mori_sub-0050421_T1w.csv

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UM_2/sub-0050421/mri/mori_sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/mwp1sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/mwp2sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/mwp3sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/neuromorphometrics_sub-0050421_T1w.csv

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UM_2/sub-0050421/mri/neuromorphometrics_sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/p0sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/p1sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/p2sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/p3sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/rp1sub-0050421_T1w_affine.nii.gz

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UM_2/sub-0050421/mri/rp2sub-0050421_T1w_affine.nii.gz

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UM_2/sub-0050421/mri/rp3sub-0050421_T1w_affine.nii.gz

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UM_2/sub-0050421/mri/t_sub-0050421_T1w_affine_reorient.mat

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UM_2/sub-0050421/mri/t_sub-0050421_T1w_rigid_reorient.mat

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UM_2/sub-0050421/mri/thalamus_sub-0050421_T1w.csv

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UM_2/sub-0050421/mri/thalamus_sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/wj_sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/wmisub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/wmsub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/wp0sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/wp1sub-0050421_T1w.nii.gz

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UM_2/sub-0050421/mri/wp2sub-0050421_T1w.nii.gz

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