[DATALAD RUNCMD] Compute UM_2/sub-0050414

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050414/anat/sub-0050414_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050414"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050414/label/catROI_sub-0050414_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jg/2W/MD5E-s58142--c497effa602ea1a29293b36ed407a6db.mat/MD5E-s58142--c497effa602ea1a29293b36ed407a6db.mat

UM_2/sub-0050414/label/catROI_sub-0050414_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kv/fP/MD5E-s188831--37852df2c93757a671ec9dff80566594.xml/MD5E-s188831--37852df2c93757a671ec9dff80566594.xml

UM_2/sub-0050414/label/catROIs_sub-0050414_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kK/8V/MD5E-s120189--e60a0a6bf196c6844ec040b6c449c4a3.mat/MD5E-s120189--e60a0a6bf196c6844ec040b6c449c4a3.mat

UM_2/sub-0050414/label/catROIs_sub-0050414_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/FG/z7/MD5E-s332073--cf05c88031a6ff4216d8402c3f7c772c.xml/MD5E-s332073--cf05c88031a6ff4216d8402c3f7c772c.xml

UM_2/sub-0050414/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050414/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7Z/JK/MD5E-s129641--74ff1507cb2364d923d6d8b5be890e6f.nii.gz/MD5E-s129641--74ff1507cb2364d923d6d8b5be890e6f.nii.gz

UM_2/sub-0050414/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050414/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wx/p4/MD5E-s144932--cc78251bba99b3ce58db17cc8cef7045.nii.gz/MD5E-s144932--cc78251bba99b3ce58db17cc8cef7045.nii.gz

UM_2/sub-0050414/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050414/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qW/pV/MD5E-s202237--f8571e855f162ba4bca33e50142eaf9c.nii.gz/MD5E-s202237--f8571e855f162ba4bca33e50142eaf9c.nii.gz

UM_2/sub-0050414/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050414/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kF/mG/MD5E-s223854--567ae2f072fbb041114e69244e70a633.nii.gz/MD5E-s223854--567ae2f072fbb041114e69244e70a633.nii.gz

UM_2/sub-0050414/mri/Tian_Subcortex_S2_7T_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050414/mri/Tian_Subcortex_S2_7T_sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k5/K9/MD5E-s17154--8bb765a186b7208a79cb99c911b90ae2.nii.gz/MD5E-s17154--8bb765a186b7208a79cb99c911b90ae2.nii.gz

UM_2/sub-0050414/mri/aal3_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_2/sub-0050414/mri/aal3_sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050414/mri/anatomy3_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_2/sub-0050414/mri/anatomy3_sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xw/Mq/MD5E-s103944--1553469fe2dabc6ed5123a8f96e4d97e.nii.gz/MD5E-s103944--1553469fe2dabc6ed5123a8f96e4d97e.nii.gz

UM_2/sub-0050414/mri/anon_misub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jx/20/MD5E-s3436244--c0e6a687d867da4df206796bfdb1b663.nii.gz/MD5E-s3436244--c0e6a687d867da4df206796bfdb1b663.nii.gz

UM_2/sub-0050414/mri/anon_msub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q5/9P/MD5E-s6679866--4f6d4259374782e79beb11ef98bbc30c.nii.gz/MD5E-s6679866--4f6d4259374782e79beb11ef98bbc30c.nii.gz

UM_2/sub-0050414/mri/cat_sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mv/8X/MD5E-s73667--18824ee999c0088050119c16c346b34d.nii.gz/MD5E-s73667--18824ee999c0088050119c16c346b34d.nii.gz

UM_2/sub-0050414/mri/cobra_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050414/mri/cobra_sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P6/g7/MD5E-s36140--bfae5b8ae04d1fb0912d55dced9663a3.nii.gz/MD5E-s36140--bfae5b8ae04d1fb0912d55dced9663a3.nii.gz

UM_2/sub-0050414/mri/hammers_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050414/mri/hammers_sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/ibsr_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UM_2/sub-0050414/mri/ibsr_sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050414/mri/it_sub-0050414_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/p2/mp/MD5E-s283--2413b832464819ffd22d9240d8ae6eee.mat/MD5E-s283--2413b832464819ffd22d9240d8ae6eee.mat

UM_2/sub-0050414/mri/it_sub-0050414_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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UM_2/sub-0050414/mri/iy_sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6p/9m/MD5E-s31013938--fa7d1b34fc1b8a46068dfc4200959084.nii.gz/MD5E-s31013938--fa7d1b34fc1b8a46068dfc4200959084.nii.gz

UM_2/sub-0050414/mri/julichbrain_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_2/sub-0050414/mri/julichbrain_sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/lpba40_sub-0050414_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_2/sub-0050414/mri/lpba40_sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/m0wp1sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/m0wp2sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/m0wp3sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/mori_sub-0050414_T1w.csv

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UM_2/sub-0050414/mri/mori_sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/mwp1sub-0050414_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050414/mri/mwp2sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/mwp3sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/neuromorphometrics_sub-0050414_T1w.csv

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UM_2/sub-0050414/mri/neuromorphometrics_sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/p0sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/p1sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/p2sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/p3sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/rp1sub-0050414_T1w_affine.nii.gz

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UM_2/sub-0050414/mri/rp2sub-0050414_T1w_affine.nii.gz

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UM_2/sub-0050414/mri/rp3sub-0050414_T1w_affine.nii.gz

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UM_2/sub-0050414/mri/t_sub-0050414_T1w_affine_reorient.mat

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UM_2/sub-0050414/mri/t_sub-0050414_T1w_rigid_reorient.mat

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UM_2/sub-0050414/mri/thalamus_sub-0050414_T1w.csv

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UM_2/sub-0050414/mri/thalamus_sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/wj_sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/wmisub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/wmsub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/wp0sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/wp1sub-0050414_T1w.nii.gz

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UM_2/sub-0050414/mri/wp2sub-0050414_T1w.nii.gz

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