[DATALAD RUNCMD] Compute KKI/sub-0050782

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/KKI/sub-0050782/anat/sub-0050782_T1w.nii.gz"
 ],
 "outputs": [
  "KKI/sub-0050782"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

KKI/sub-0050782/label/catROI_sub-0050782_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0J/54/MD5E-s61310--2cc2d284d5fccc1d7fc9db79d60d9e64.mat/MD5E-s61310--2cc2d284d5fccc1d7fc9db79d60d9e64.mat

KKI/sub-0050782/label/catROI_sub-0050782_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/M2/f7/MD5E-s188829--9c5c11961a321ad315096a11f287310f.xml/MD5E-s188829--9c5c11961a321ad315096a11f287310f.xml

KKI/sub-0050782/label/catROIs_sub-0050782_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/W4/1x/MD5E-s120185--81496ce646519f60bbfbfb703ef35f8a.mat/MD5E-s120185--81496ce646519f60bbfbfb703ef35f8a.mat

KKI/sub-0050782/label/catROIs_sub-0050782_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/vJ/Jp/MD5E-s332112--4876ecf50aac69bf09bff5daa708fa5d.xml/MD5E-s332112--4876ecf50aac69bf09bff5daa708fa5d.xml

KKI/sub-0050782/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050782_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

KKI/sub-0050782/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G6/jv/MD5E-s189631--e2919206d7210feb4f7b1813ee095245.nii.gz/MD5E-s189631--e2919206d7210feb4f7b1813ee095245.nii.gz

KKI/sub-0050782/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050782_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

KKI/sub-0050782/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K2/82/MD5E-s211958--df4650c7ba69216159b24fc0ed81da47.nii.gz/MD5E-s211958--df4650c7ba69216159b24fc0ed81da47.nii.gz

KKI/sub-0050782/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050782_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

KKI/sub-0050782/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/38/Gw/MD5E-s270427--53e3f037354efba73cdc6c3152d1000b.nii.gz/MD5E-s270427--53e3f037354efba73cdc6c3152d1000b.nii.gz

KKI/sub-0050782/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050782_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

KKI/sub-0050782/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z8/1J/MD5E-s300407--a5974cf512f0489b70f95198b9d20289.nii.gz/MD5E-s300407--a5974cf512f0489b70f95198b9d20289.nii.gz

KKI/sub-0050782/mri/Tian_Subcortex_S2_7T_sub-0050782_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

KKI/sub-0050782/mri/Tian_Subcortex_S2_7T_sub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q3/gm/MD5E-s26530--9879514186fae63089386a382ad3b803.nii.gz/MD5E-s26530--9879514186fae63089386a382ad3b803.nii.gz

KKI/sub-0050782/mri/aal3_sub-0050782_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

KKI/sub-0050782/mri/aal3_sub-0050782_T1w.nii.gz

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+../../../.git/annex/objects/34/Mp/MD5E-s210020--1b4fb8acef96d319943335d3130a4f94.nii.gz/MD5E-s210020--1b4fb8acef96d319943335d3130a4f94.nii.gz

KKI/sub-0050782/mri/anatomy3_sub-0050782_T1w.csv

@@ -0,0 +1 @@
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KKI/sub-0050782/mri/anatomy3_sub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8V/mj/MD5E-s152760--d89cec926ab37b80a4e497397658c61e.nii.gz/MD5E-s152760--d89cec926ab37b80a4e497397658c61e.nii.gz

KKI/sub-0050782/mri/anon_misub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1m/5P/MD5E-s4190959--aaca8331f52e6502f649410a41f9286b.nii.gz/MD5E-s4190959--aaca8331f52e6502f649410a41f9286b.nii.gz

KKI/sub-0050782/mri/anon_msub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W8/gP/MD5E-s12099129--e51e38fb4091a3bbf01f55e5a135e35a.nii.gz/MD5E-s12099129--e51e38fb4091a3bbf01f55e5a135e35a.nii.gz

KKI/sub-0050782/mri/cat_sub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GQ/9J/MD5E-s109851--cbb95e4881d532631cc596b02fe4ea13.nii.gz/MD5E-s109851--cbb95e4881d532631cc596b02fe4ea13.nii.gz

KKI/sub-0050782/mri/cobra_sub-0050782_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

KKI/sub-0050782/mri/cobra_sub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qq/P6/MD5E-s53423--dcef6d5ce442490dfc4b7d91e93add03.nii.gz/MD5E-s53423--dcef6d5ce442490dfc4b7d91e93add03.nii.gz

KKI/sub-0050782/mri/hammers_sub-0050782_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

KKI/sub-0050782/mri/hammers_sub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jf/22/MD5E-s163980--05bdead01746e0c76d696eff5ed84d13.nii.gz/MD5E-s163980--05bdead01746e0c76d696eff5ed84d13.nii.gz

KKI/sub-0050782/mri/ibsr_sub-0050782_T1w.csv

@@ -0,0 +1 @@
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KKI/sub-0050782/mri/ibsr_sub-0050782_T1w.nii.gz

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+../../../.git/annex/objects/v4/WZ/MD5E-s170961--40a4f99ed7764b447d50aa68acae3b26.nii.gz/MD5E-s170961--40a4f99ed7764b447d50aa68acae3b26.nii.gz

KKI/sub-0050782/mri/it_sub-0050782_T1w_affine_reorient.mat

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+../../../.git/annex/objects/58/p7/MD5E-s283--a5c7c6c9364b9ef95fb7c794201b207a.mat/MD5E-s283--a5c7c6c9364b9ef95fb7c794201b207a.mat

KKI/sub-0050782/mri/it_sub-0050782_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pk/jg/MD5E-s284--90468bc34af02810102cccf843f2c55e.mat/MD5E-s284--90468bc34af02810102cccf843f2c55e.mat

KKI/sub-0050782/mri/iy_sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/julichbrain_sub-0050782_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

KKI/sub-0050782/mri/julichbrain_sub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KG/22/MD5E-s224984--fc3cf45e8f7b36bf7d6b4db8ac17656d.nii.gz/MD5E-s224984--fc3cf45e8f7b36bf7d6b4db8ac17656d.nii.gz

KKI/sub-0050782/mri/lpba40_sub-0050782_T1w.csv

@@ -0,0 +1 @@
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KKI/sub-0050782/mri/lpba40_sub-0050782_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050782/mri/m0wp1sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/m0wp2sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/m0wp3sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/mori_sub-0050782_T1w.csv

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KKI/sub-0050782/mri/mori_sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/mwp1sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/mwp2sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/mwp3sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/neuromorphometrics_sub-0050782_T1w.csv

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KKI/sub-0050782/mri/neuromorphometrics_sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/p0sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/p1sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/p2sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/p3sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/rp1sub-0050782_T1w_affine.nii.gz

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KKI/sub-0050782/mri/rp2sub-0050782_T1w_affine.nii.gz

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KKI/sub-0050782/mri/rp3sub-0050782_T1w_affine.nii.gz

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KKI/sub-0050782/mri/t_sub-0050782_T1w_affine_reorient.mat

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KKI/sub-0050782/mri/t_sub-0050782_T1w_rigid_reorient.mat

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KKI/sub-0050782/mri/thalamus_sub-0050782_T1w.csv

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KKI/sub-0050782/mri/thalamus_sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/wj_sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/wmisub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/wmsub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/wp0sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/wp1sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/wp2sub-0050782_T1w.nii.gz

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KKI/sub-0050782/mri/wp3sub-0050782_T1w.nii.gz

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