[DATALAD RUNCMD] Compute NYU/sub-0050955

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/NYU/sub-0050955/anat/sub-0050955_T1w.nii.gz"
 ],
 "outputs": [
  "NYU/sub-0050955"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU/sub-0050955/label/catROI_sub-0050955_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/FV/Vj/MD5E-s57950--9e1da535bc8e8cdbbbf969d295f918fa.mat/MD5E-s57950--9e1da535bc8e8cdbbbf969d295f918fa.mat

NYU/sub-0050955/label/catROI_sub-0050955_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/97/MD5E-s188825--43708b89396f02fcfee4a9ac8244b857.xml/MD5E-s188825--43708b89396f02fcfee4a9ac8244b857.xml

NYU/sub-0050955/label/catROIs_sub-0050955_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wZ/PW/MD5E-s120368--2d2bacd9726545247a66b19f5c8ec9f4.mat/MD5E-s120368--2d2bacd9726545247a66b19f5c8ec9f4.mat

NYU/sub-0050955/label/catROIs_sub-0050955_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fQ/Z1/MD5E-s332139--d5d0ccf139d2a64967281192ce405aa7.xml/MD5E-s332139--d5d0ccf139d2a64967281192ce405aa7.xml

NYU/sub-0050955/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050955_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU/sub-0050955/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050955_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mQ/Jm/MD5E-s148626--134dca0482db692295ecd0da828f59a7.nii.gz/MD5E-s148626--134dca0482db692295ecd0da828f59a7.nii.gz

NYU/sub-0050955/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050955_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU/sub-0050955/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050955_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fF/K5/MD5E-s165461--e58da22790df201bb9b70db68ffab79b.nii.gz/MD5E-s165461--e58da22790df201bb9b70db68ffab79b.nii.gz

NYU/sub-0050955/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050955_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU/sub-0050955/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050955_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9F/x3/MD5E-s224144--959330545993aa373b65feb70ea4bd4d.nii.gz/MD5E-s224144--959330545993aa373b65feb70ea4bd4d.nii.gz

NYU/sub-0050955/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050955_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU/sub-0050955/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050955_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mg/qQ/MD5E-s247562--f17e8bef07fddb297d1b13f08de5f79d.nii.gz/MD5E-s247562--f17e8bef07fddb297d1b13f08de5f79d.nii.gz

NYU/sub-0050955/mri/Tian_Subcortex_S2_7T_sub-0050955_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU/sub-0050955/mri/Tian_Subcortex_S2_7T_sub-0050955_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X7/vm/MD5E-s19818--2f3575034d93ae5fdb33ba19d257a9c4.nii.gz/MD5E-s19818--2f3575034d93ae5fdb33ba19d257a9c4.nii.gz

NYU/sub-0050955/mri/aal3_sub-0050955_T1w.csv

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NYU/sub-0050955/mri/aal3_sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/anatomy3_sub-0050955_T1w.csv

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NYU/sub-0050955/mri/anatomy3_sub-0050955_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kX/4G/MD5E-s118173--896ffe765c66615327806e4b2e24f9d0.nii.gz/MD5E-s118173--896ffe765c66615327806e4b2e24f9d0.nii.gz

NYU/sub-0050955/mri/anon_misub-0050955_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0050955/mri/anon_msub-0050955_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zz/P2/MD5E-s8931709--13c8725b6e2ee04d595cb8086b4a5b26.nii.gz/MD5E-s8931709--13c8725b6e2ee04d595cb8086b4a5b26.nii.gz

NYU/sub-0050955/mri/cat_sub-0050955_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qQ/fZ/MD5E-s88784--4e4a5dae30209cd6d0c437b72b013e3c.nii.gz/MD5E-s88784--4e4a5dae30209cd6d0c437b72b013e3c.nii.gz

NYU/sub-0050955/mri/cobra_sub-0050955_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU/sub-0050955/mri/cobra_sub-0050955_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K5/W8/MD5E-s34375--f96ce92c7fcfb2eecfc6b323d6e603a8.nii.gz/MD5E-s34375--f96ce92c7fcfb2eecfc6b323d6e603a8.nii.gz

NYU/sub-0050955/mri/hammers_sub-0050955_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU/sub-0050955/mri/hammers_sub-0050955_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vV/F6/MD5E-s124871--70034789ef3547198a0b5c78777ac0f8.nii.gz/MD5E-s124871--70034789ef3547198a0b5c78777ac0f8.nii.gz

NYU/sub-0050955/mri/ibsr_sub-0050955_T1w.csv

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NYU/sub-0050955/mri/ibsr_sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/it_sub-0050955_T1w_affine_reorient.mat

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NYU/sub-0050955/mri/it_sub-0050955_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/v5/pG/MD5E-s283--42c7f1b34094da951ba6e5a3d96ac9db.mat/MD5E-s283--42c7f1b34094da951ba6e5a3d96ac9db.mat

NYU/sub-0050955/mri/iy_sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/julichbrain_sub-0050955_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU/sub-0050955/mri/julichbrain_sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/lpba40_sub-0050955_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU/sub-0050955/mri/lpba40_sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/m0wp1sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/m0wp2sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/m0wp3sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/mori_sub-0050955_T1w.csv

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NYU/sub-0050955/mri/mori_sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/mwp1sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/mwp2sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/mwp3sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/neuromorphometrics_sub-0050955_T1w.csv

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NYU/sub-0050955/mri/neuromorphometrics_sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/p0sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/p1sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/p2sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/p3sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/rp1sub-0050955_T1w_affine.nii.gz

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NYU/sub-0050955/mri/rp2sub-0050955_T1w_affine.nii.gz

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NYU/sub-0050955/mri/rp3sub-0050955_T1w_affine.nii.gz

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NYU/sub-0050955/mri/t_sub-0050955_T1w_affine_reorient.mat

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NYU/sub-0050955/mri/t_sub-0050955_T1w_rigid_reorient.mat

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NYU/sub-0050955/mri/thalamus_sub-0050955_T1w.csv

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NYU/sub-0050955/mri/thalamus_sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/wj_sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/wmisub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/wmsub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/wp0sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/wp1sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/wp2sub-0050955_T1w.nii.gz

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NYU/sub-0050955/mri/wp3sub-0050955_T1w.nii.gz

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