[DATALAD RUNCMD] Compute UM_1/sub-0050293

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050293/anat/sub-0050293_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050293"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050293/label/catROI_sub-0050293_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2Q/j7/MD5E-s61499--66884bc095ef8d72007b1bf05192c318.mat/MD5E-s61499--66884bc095ef8d72007b1bf05192c318.mat

UM_1/sub-0050293/label/catROI_sub-0050293_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/KV/VF/MD5E-s188943--a5e7ec196fe61ef2516be84581162305.xml/MD5E-s188943--a5e7ec196fe61ef2516be84581162305.xml

UM_1/sub-0050293/label/catROIs_sub-0050293_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/QW/f1/MD5E-s120080--4351acc19b292897fc7bb85267627dd6.mat/MD5E-s120080--4351acc19b292897fc7bb85267627dd6.mat

UM_1/sub-0050293/label/catROIs_sub-0050293_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/xM/wV/MD5E-s332128--2f134c2490824a5cee57726d95100d47.xml/MD5E-s332128--2f134c2490824a5cee57726d95100d47.xml

UM_1/sub-0050293/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050293_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050293/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050293_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xg/ZM/MD5E-s146900--c83819b710c1e7f962c81257e8a53988.nii.gz/MD5E-s146900--c83819b710c1e7f962c81257e8a53988.nii.gz

UM_1/sub-0050293/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050293_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050293/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050293_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vm/xq/MD5E-s164404--51440f9e5ae95c0b1db4b0bf7aa85014.nii.gz/MD5E-s164404--51440f9e5ae95c0b1db4b0bf7aa85014.nii.gz

UM_1/sub-0050293/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050293_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050293/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050293_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F6/Wf/MD5E-s205069--db2caf40b2f143ee70408e605b908a80.nii.gz/MD5E-s205069--db2caf40b2f143ee70408e605b908a80.nii.gz

UM_1/sub-0050293/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050293_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050293/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050293_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WX/Vx/MD5E-s229618--28eff34cc096dba04ad1e372dd65be3b.nii.gz/MD5E-s229618--28eff34cc096dba04ad1e372dd65be3b.nii.gz

UM_1/sub-0050293/mri/Tian_Subcortex_S2_7T_sub-0050293_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050293/mri/Tian_Subcortex_S2_7T_sub-0050293_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7x/Qg/MD5E-s17527--8dc1b546d58109967fa22c17ed59bd9c.nii.gz/MD5E-s17527--8dc1b546d58109967fa22c17ed59bd9c.nii.gz

UM_1/sub-0050293/mri/aal3_sub-0050293_T1w.csv

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UM_1/sub-0050293/mri/aal3_sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/anatomy3_sub-0050293_T1w.csv

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UM_1/sub-0050293/mri/anatomy3_sub-0050293_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0x/8f/MD5E-s117759--a1d69017483ce74abbec1a8eb5285207.nii.gz/MD5E-s117759--a1d69017483ce74abbec1a8eb5285207.nii.gz

UM_1/sub-0050293/mri/anon_misub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/anon_msub-0050293_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f8/wp/MD5E-s5357865--cb0fc2c6e0d0194c6ee73ef8a78d4728.nii.gz/MD5E-s5357865--cb0fc2c6e0d0194c6ee73ef8a78d4728.nii.gz

UM_1/sub-0050293/mri/cat_sub-0050293_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M5/8f/MD5E-s85637--c635ff11ef74851bcf5f82c6763b6d67.nii.gz/MD5E-s85637--c635ff11ef74851bcf5f82c6763b6d67.nii.gz

UM_1/sub-0050293/mri/cobra_sub-0050293_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050293/mri/cobra_sub-0050293_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9K/7P/MD5E-s36718--f0d0ef7e31e2d60a1e1239267d703b33.nii.gz/MD5E-s36718--f0d0ef7e31e2d60a1e1239267d703b33.nii.gz

UM_1/sub-0050293/mri/hammers_sub-0050293_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050293/mri/hammers_sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/ibsr_sub-0050293_T1w.csv

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UM_1/sub-0050293/mri/ibsr_sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/it_sub-0050293_T1w_affine_reorient.mat

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UM_1/sub-0050293/mri/it_sub-0050293_T1w_rigid_reorient.mat

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UM_1/sub-0050293/mri/iy_sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/julichbrain_sub-0050293_T1w.csv

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UM_1/sub-0050293/mri/julichbrain_sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/lpba40_sub-0050293_T1w.csv

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UM_1/sub-0050293/mri/lpba40_sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/m0wp1sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/m0wp2sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/m0wp3sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/mori_sub-0050293_T1w.csv

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UM_1/sub-0050293/mri/mori_sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/mwp1sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/mwp2sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/mwp3sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/neuromorphometrics_sub-0050293_T1w.csv

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UM_1/sub-0050293/mri/neuromorphometrics_sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/p0sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/p1sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/p2sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/p3sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/rp1sub-0050293_T1w_affine.nii.gz

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UM_1/sub-0050293/mri/rp2sub-0050293_T1w_affine.nii.gz

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UM_1/sub-0050293/mri/rp3sub-0050293_T1w_affine.nii.gz

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UM_1/sub-0050293/mri/t_sub-0050293_T1w_affine_reorient.mat

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UM_1/sub-0050293/mri/t_sub-0050293_T1w_rigid_reorient.mat

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UM_1/sub-0050293/mri/thalamus_sub-0050293_T1w.csv

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UM_1/sub-0050293/mri/thalamus_sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/wj_sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/wmisub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/wp0sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/wp1sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/wp2sub-0050293_T1w.nii.gz

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UM_1/sub-0050293/mri/wp3sub-0050293_T1w.nii.gz

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