[DATALAD RUNCMD] Compute USM/sub-0050474

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050474/anat/sub-0050474_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050474"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050474/label/catROI_sub-0050474_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0q/jZ/MD5E-s61370--410e66f5617eca4f5c11a0c1e3966301.mat/MD5E-s61370--410e66f5617eca4f5c11a0c1e3966301.mat

USM/sub-0050474/label/catROI_sub-0050474_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/x2/xf/MD5E-s189002--038b4b411b78fbabe70e4db4aee7af10.xml/MD5E-s189002--038b4b411b78fbabe70e4db4aee7af10.xml

USM/sub-0050474/label/catROIs_sub-0050474_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xj/QK/MD5E-s120006--046af0449341803d91abd3fe8d4786dc.mat/MD5E-s120006--046af0449341803d91abd3fe8d4786dc.mat

USM/sub-0050474/label/catROIs_sub-0050474_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/kg/jz/MD5E-s332164--070dde7c88c2ff54bc7b86d5e73d4462.xml/MD5E-s332164--070dde7c88c2ff54bc7b86d5e73d4462.xml

USM/sub-0050474/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050474_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050474/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vk/41/MD5E-s394094--6679b614fa0115ea087a3b0950bd8109.nii.gz/MD5E-s394094--6679b614fa0115ea087a3b0950bd8109.nii.gz

USM/sub-0050474/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050474_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050474/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6j/p8/MD5E-s437997--509431581ae50ce0faf84a0e93c96818.nii.gz/MD5E-s437997--509431581ae50ce0faf84a0e93c96818.nii.gz

USM/sub-0050474/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050474_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050474/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w2/P8/MD5E-s629415--7a3f1ad467aa9fbacc194e8028a34c99.nii.gz/MD5E-s629415--7a3f1ad467aa9fbacc194e8028a34c99.nii.gz

USM/sub-0050474/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050474_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050474/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5G/0w/MD5E-s690959--79153d655544ad804364ef1481c60288.nii.gz/MD5E-s690959--79153d655544ad804364ef1481c60288.nii.gz

USM/sub-0050474/mri/Tian_Subcortex_S2_7T_sub-0050474_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050474/mri/Tian_Subcortex_S2_7T_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/vF/MD5E-s67428--e2529327d09fa3f9250944f60073591f.nii.gz/MD5E-s67428--e2529327d09fa3f9250944f60073591f.nii.gz

USM/sub-0050474/mri/aal3_sub-0050474_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050474/mri/aal3_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VF/G1/MD5E-s439072--ecce53078532b250f0d02deab551f96d.nii.gz/MD5E-s439072--ecce53078532b250f0d02deab551f96d.nii.gz

USM/sub-0050474/mri/anatomy3_sub-0050474_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050474/mri/anatomy3_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xg/PZ/MD5E-s332411--38417a90e52698261d9bd525b546a39e.nii.gz/MD5E-s332411--38417a90e52698261d9bd525b546a39e.nii.gz

USM/sub-0050474/mri/anon_misub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WZ/FM/MD5E-s17628992--d536f35e93f3e479183a1eb2ab7ea6e7.nii.gz/MD5E-s17628992--d536f35e93f3e479183a1eb2ab7ea6e7.nii.gz

USM/sub-0050474/mri/anon_msub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/92/5X/MD5E-s32184570--6e948ba34b34206035a32c509f6d8e0d.nii.gz/MD5E-s32184570--6e948ba34b34206035a32c509f6d8e0d.nii.gz

USM/sub-0050474/mri/cat_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f7/Fk/MD5E-s246874--29456ec5d4cdac2ab95f30cf61280483.nii.gz/MD5E-s246874--29456ec5d4cdac2ab95f30cf61280483.nii.gz

USM/sub-0050474/mri/cobra_sub-0050474_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050474/mri/cobra_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vp/p3/MD5E-s122808--d9c883e0781f8f79a0b39f802514740f.nii.gz/MD5E-s122808--d9c883e0781f8f79a0b39f802514740f.nii.gz

USM/sub-0050474/mri/hammers_sub-0050474_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050474/mri/hammers_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1K/WM/MD5E-s353265--78a88645afa761aaa85e2d919327a549.nii.gz/MD5E-s353265--78a88645afa761aaa85e2d919327a549.nii.gz

USM/sub-0050474/mri/ibsr_sub-0050474_T1w.csv

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USM/sub-0050474/mri/ibsr_sub-0050474_T1w.nii.gz

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+../../../.git/annex/objects/Xq/j6/MD5E-s373730--772365020a203273370f841219e475d3.nii.gz/MD5E-s373730--772365020a203273370f841219e475d3.nii.gz

USM/sub-0050474/mri/it_sub-0050474_T1w_affine_reorient.mat

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+../../../.git/annex/objects/g9/63/MD5E-s283--abe0c8f2c71996ca9b1bbb738b12b7db.mat/MD5E-s283--abe0c8f2c71996ca9b1bbb738b12b7db.mat

USM/sub-0050474/mri/it_sub-0050474_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fg/Zg/MD5E-s282--d2edcd73efc257be26545624bc887cb1.mat/MD5E-s282--d2edcd73efc257be26545624bc887cb1.mat

USM/sub-0050474/mri/iy_sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/julichbrain_sub-0050474_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050474/mri/julichbrain_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w8/P1/MD5E-s467616--f054134f3030de7b5933f885530684a9.nii.gz/MD5E-s467616--f054134f3030de7b5933f885530684a9.nii.gz

USM/sub-0050474/mri/lpba40_sub-0050474_T1w.csv

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USM/sub-0050474/mri/lpba40_sub-0050474_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050474/mri/m0wp1sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/m0wp2sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/m0wp3sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/mori_sub-0050474_T1w.csv

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USM/sub-0050474/mri/mori_sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/mwp1sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/mwp2sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/mwp3sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/neuromorphometrics_sub-0050474_T1w.csv

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USM/sub-0050474/mri/neuromorphometrics_sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/p0sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/p1sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/p2sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/p3sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/rp1sub-0050474_T1w_affine.nii.gz

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USM/sub-0050474/mri/rp2sub-0050474_T1w_affine.nii.gz

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USM/sub-0050474/mri/rp3sub-0050474_T1w_affine.nii.gz

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USM/sub-0050474/mri/t_sub-0050474_T1w_affine_reorient.mat

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USM/sub-0050474/mri/t_sub-0050474_T1w_rigid_reorient.mat

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USM/sub-0050474/mri/thalamus_sub-0050474_T1w.csv

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USM/sub-0050474/mri/thalamus_sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/wj_sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/wmisub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/wmsub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/wp0sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/wp1sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/wp2sub-0050474_T1w.nii.gz

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USM/sub-0050474/mri/wp3sub-0050474_T1w.nii.gz

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