[DATALAD RUNCMD] Compute Pitt/sub-0050014

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050014/anat/sub-0050014_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050014"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050014/label/catROI_sub-0050014_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gZ/6W/MD5E-s61326--16100f597ea4384ba8cb5ed0528026f2.mat/MD5E-s61326--16100f597ea4384ba8cb5ed0528026f2.mat

Pitt/sub-0050014/label/catROI_sub-0050014_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/gF/4v/MD5E-s188895--70177cf7b9fa39f52102359bbd2b2870.xml/MD5E-s188895--70177cf7b9fa39f52102359bbd2b2870.xml

Pitt/sub-0050014/label/catROIs_sub-0050014_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/5G/MD5E-s120199--d7919553cd35ac4f323e5db7e44afa7f.mat/MD5E-s120199--d7919553cd35ac4f323e5db7e44afa7f.mat

Pitt/sub-0050014/label/catROIs_sub-0050014_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/W3/PP/MD5E-s332105--2c823c084e5b817af87b0e1af72684a7.xml/MD5E-s332105--2c823c084e5b817af87b0e1af72684a7.xml

Pitt/sub-0050014/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050014_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050014/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050014_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qv/74/MD5E-s153821--41154386d69af2291fb7a4f234bf88b9.nii.gz/MD5E-s153821--41154386d69af2291fb7a4f234bf88b9.nii.gz

Pitt/sub-0050014/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050014_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050014/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050014_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gG/7m/MD5E-s173039--f76acfe132f67d386ac233e69fff05b4.nii.gz/MD5E-s173039--f76acfe132f67d386ac233e69fff05b4.nii.gz

Pitt/sub-0050014/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050014_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050014/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050014_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/56/5v/MD5E-s232484--2cf4c37e95e958471a911fedfed29c9d.nii.gz/MD5E-s232484--2cf4c37e95e958471a911fedfed29c9d.nii.gz

Pitt/sub-0050014/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050014_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050014/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050014_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xf/4j/MD5E-s260229--0fc5d97059091ab0778a081136745994.nii.gz/MD5E-s260229--0fc5d97059091ab0778a081136745994.nii.gz

Pitt/sub-0050014/mri/Tian_Subcortex_S2_7T_sub-0050014_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Pitt/sub-0050014/mri/Tian_Subcortex_S2_7T_sub-0050014_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M6/3J/MD5E-s23834--951523099dff678caf40137568d27a03.nii.gz/MD5E-s23834--951523099dff678caf40137568d27a03.nii.gz

Pitt/sub-0050014/mri/aal3_sub-0050014_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050014/mri/aal3_sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/anatomy3_sub-0050014_T1w.csv

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Pitt/sub-0050014/mri/anatomy3_sub-0050014_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9G/33/MD5E-s128148--c4fd8ea08b1aff3a5f7ec8d588cdcf05.nii.gz/MD5E-s128148--c4fd8ea08b1aff3a5f7ec8d588cdcf05.nii.gz

Pitt/sub-0050014/mri/anon_misub-0050014_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050014/mri/anon_msub-0050014_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8Q/FK/MD5E-s12259851--f22b6ff1ef3ba7c3ff51f7c6a870709a.nii.gz/MD5E-s12259851--f22b6ff1ef3ba7c3ff51f7c6a870709a.nii.gz

Pitt/sub-0050014/mri/cat_sub-0050014_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vF/39/MD5E-s93334--82a68f940bd8ce2b1543676ae7a008be.nii.gz/MD5E-s93334--82a68f940bd8ce2b1543676ae7a008be.nii.gz

Pitt/sub-0050014/mri/cobra_sub-0050014_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050014/mri/cobra_sub-0050014_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wP/V4/MD5E-s47287--817e7270a757f24a1e957a04841f8b84.nii.gz/MD5E-s47287--817e7270a757f24a1e957a04841f8b84.nii.gz

Pitt/sub-0050014/mri/hammers_sub-0050014_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050014/mri/hammers_sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/ibsr_sub-0050014_T1w.csv

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Pitt/sub-0050014/mri/ibsr_sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/it_sub-0050014_T1w_affine_reorient.mat

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Pitt/sub-0050014/mri/it_sub-0050014_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gp/vP/MD5E-s285--6ceb426a7bbbf3b3944422f1d53cf655.mat/MD5E-s285--6ceb426a7bbbf3b3944422f1d53cf655.mat

Pitt/sub-0050014/mri/iy_sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/julichbrain_sub-0050014_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Pitt/sub-0050014/mri/julichbrain_sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/lpba40_sub-0050014_T1w.csv

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+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Pitt/sub-0050014/mri/lpba40_sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/m0wp1sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/m0wp2sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/m0wp3sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/mori_sub-0050014_T1w.csv

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Pitt/sub-0050014/mri/mori_sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/mwp1sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/mwp2sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/mwp3sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/neuromorphometrics_sub-0050014_T1w.csv

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Pitt/sub-0050014/mri/neuromorphometrics_sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/p0sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/p1sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/p2sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/p3sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/rp1sub-0050014_T1w_affine.nii.gz

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Pitt/sub-0050014/mri/rp2sub-0050014_T1w_affine.nii.gz

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Pitt/sub-0050014/mri/rp3sub-0050014_T1w_affine.nii.gz

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Pitt/sub-0050014/mri/t_sub-0050014_T1w_affine_reorient.mat

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Pitt/sub-0050014/mri/t_sub-0050014_T1w_rigid_reorient.mat

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Pitt/sub-0050014/mri/thalamus_sub-0050014_T1w.csv

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Pitt/sub-0050014/mri/thalamus_sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/wj_sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/wmisub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/wmsub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/wp0sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/wp1sub-0050014_T1w.nii.gz

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Pitt/sub-0050014/mri/wp2sub-0050014_T1w.nii.gz

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