[DATALAD RUNCMD] Compute UM_1/sub-0050322

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050322/anat/sub-0050322_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050322"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050322/label/catROI_sub-0050322_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/j1/FG/MD5E-s61505--03037cc8e9d3f98767d85807549756aa.mat/MD5E-s61505--03037cc8e9d3f98767d85807549756aa.mat

UM_1/sub-0050322/label/catROI_sub-0050322_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/6w/V7/MD5E-s188869--38fb95592e6072c443ef14bfd78db1c4.xml/MD5E-s188869--38fb95592e6072c443ef14bfd78db1c4.xml

UM_1/sub-0050322/label/catROIs_sub-0050322_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/j0/7K/MD5E-s120435--af8effbf621b8b1f7b0482a52edb3f2c.mat/MD5E-s120435--af8effbf621b8b1f7b0482a52edb3f2c.mat

UM_1/sub-0050322/label/catROIs_sub-0050322_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9M/k3/MD5E-s332195--c481c8620f19c2d2058aa08c5f342b22.xml/MD5E-s332195--c481c8620f19c2d2058aa08c5f342b22.xml

UM_1/sub-0050322/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050322/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jM/Q4/MD5E-s167344--4a7e953333d90604ae7ec128efcd33a7.nii.gz/MD5E-s167344--4a7e953333d90604ae7ec128efcd33a7.nii.gz

UM_1/sub-0050322/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050322/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/90/05/MD5E-s188259--426f2914cbee1ac2d92aa18b23e385fb.nii.gz/MD5E-s188259--426f2914cbee1ac2d92aa18b23e385fb.nii.gz

UM_1/sub-0050322/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050322/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g4/M9/MD5E-s236056--45d63925f1da44e66db2cc164444f558.nii.gz/MD5E-s236056--45d63925f1da44e66db2cc164444f558.nii.gz

UM_1/sub-0050322/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050322/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8Z/W6/MD5E-s263418--92bbc3834506f0b15a9c3bff2ec5ad55.nii.gz/MD5E-s263418--92bbc3834506f0b15a9c3bff2ec5ad55.nii.gz

UM_1/sub-0050322/mri/Tian_Subcortex_S2_7T_sub-0050322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050322/mri/Tian_Subcortex_S2_7T_sub-0050322_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050322/mri/aal3_sub-0050322_T1w.csv

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UM_1/sub-0050322/mri/aal3_sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/anatomy3_sub-0050322_T1w.csv

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UM_1/sub-0050322/mri/anatomy3_sub-0050322_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050322/mri/anon_misub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/anon_msub-0050322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WK/kf/MD5E-s7543223--ed6b04a35df3d85c7b4127a667a88e8e.nii.gz/MD5E-s7543223--ed6b04a35df3d85c7b4127a667a88e8e.nii.gz

UM_1/sub-0050322/mri/cat_sub-0050322_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050322/mri/cobra_sub-0050322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050322/mri/cobra_sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/hammers_sub-0050322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050322/mri/hammers_sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/ibsr_sub-0050322_T1w.csv

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UM_1/sub-0050322/mri/ibsr_sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/it_sub-0050322_T1w_affine_reorient.mat

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UM_1/sub-0050322/mri/it_sub-0050322_T1w_rigid_reorient.mat

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UM_1/sub-0050322/mri/iy_sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/julichbrain_sub-0050322_T1w.csv

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UM_1/sub-0050322/mri/julichbrain_sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/lpba40_sub-0050322_T1w.csv

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UM_1/sub-0050322/mri/lpba40_sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/m0wp1sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/m0wp2sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/m0wp3sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/mori_sub-0050322_T1w.csv

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UM_1/sub-0050322/mri/mori_sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/mwp1sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/mwp2sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/mwp3sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/neuromorphometrics_sub-0050322_T1w.csv

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UM_1/sub-0050322/mri/neuromorphometrics_sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/p0sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/p1sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/p2sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/p3sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/rp1sub-0050322_T1w_affine.nii.gz

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UM_1/sub-0050322/mri/rp2sub-0050322_T1w_affine.nii.gz

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UM_1/sub-0050322/mri/rp3sub-0050322_T1w_affine.nii.gz

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UM_1/sub-0050322/mri/t_sub-0050322_T1w_affine_reorient.mat

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UM_1/sub-0050322/mri/t_sub-0050322_T1w_rigid_reorient.mat

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UM_1/sub-0050322/mri/thalamus_sub-0050322_T1w.csv

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UM_1/sub-0050322/mri/thalamus_sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/wj_sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/wmisub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/wp0sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/wp1sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/wp2sub-0050322_T1w.nii.gz

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UM_1/sub-0050322/mri/wp3sub-0050322_T1w.nii.gz

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