[DATALAD RUNCMD] Compute Yale/sub-0050557

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050557/anat/sub-0050557_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050557"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050557/label/catROI_sub-0050557_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/29/gw/MD5E-s58035--8807db8c8d2f8109a19e8fbb2a2a4b58.mat/MD5E-s58035--8807db8c8d2f8109a19e8fbb2a2a4b58.mat

Yale/sub-0050557/label/catROI_sub-0050557_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/8w/kk/MD5E-s188656--f8e4b7006360a2f3e4f559d259c8660a.xml/MD5E-s188656--f8e4b7006360a2f3e4f559d259c8660a.xml

Yale/sub-0050557/label/catROIs_sub-0050557_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/j5/pQ/MD5E-s120180--049b9df2a45c0b3e0683727abd7aab33.mat/MD5E-s120180--049b9df2a45c0b3e0683727abd7aab33.mat

Yale/sub-0050557/label/catROIs_sub-0050557_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/46/xV/MD5E-s332159--27e06fe585ca52d04e5687c0bec6b3c1.xml/MD5E-s332159--27e06fe585ca52d04e5687c0bec6b3c1.xml

Yale/sub-0050557/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050557_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050557/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050557_T1w.nii.gz

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+../../../.git/annex/objects/vm/3f/MD5E-s177482--8a8beff322321b8b2c0dd76ffa0d512a.nii.gz/MD5E-s177482--8a8beff322321b8b2c0dd76ffa0d512a.nii.gz

Yale/sub-0050557/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050557_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050557/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050557_T1w.nii.gz

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+../../../.git/annex/objects/82/3J/MD5E-s199259--047bf3ec8aea5a06f49a080886525381.nii.gz/MD5E-s199259--047bf3ec8aea5a06f49a080886525381.nii.gz

Yale/sub-0050557/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050557_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050557/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050557_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mG/4w/MD5E-s268362--22e6a24515a65c3330a333125a55f653.nii.gz/MD5E-s268362--22e6a24515a65c3330a333125a55f653.nii.gz

Yale/sub-0050557/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050557_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050557/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050557_T1w.nii.gz

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+../../../.git/annex/objects/WZ/w0/MD5E-s298133--3e627518df34d65538b8d86641552459.nii.gz/MD5E-s298133--3e627518df34d65538b8d86641552459.nii.gz

Yale/sub-0050557/mri/Tian_Subcortex_S2_7T_sub-0050557_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050557/mri/Tian_Subcortex_S2_7T_sub-0050557_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9v/vk/MD5E-s26620--b1a5e77a18fcd99bcdd71cac212316b6.nii.gz/MD5E-s26620--b1a5e77a18fcd99bcdd71cac212316b6.nii.gz

Yale/sub-0050557/mri/aal3_sub-0050557_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050557/mri/aal3_sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/anatomy3_sub-0050557_T1w.csv

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Yale/sub-0050557/mri/anatomy3_sub-0050557_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZM/Pv/MD5E-s146264--0c49ae94310e571f336b094daf87c878.nii.gz/MD5E-s146264--0c49ae94310e571f336b094daf87c878.nii.gz

Yale/sub-0050557/mri/anon_misub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/anon_msub-0050557_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z0/z9/MD5E-s9922201--6ae7150e9de15a11261b97416e9aebeb.nii.gz/MD5E-s9922201--6ae7150e9de15a11261b97416e9aebeb.nii.gz

Yale/sub-0050557/mri/cat_sub-0050557_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/54/VJ/MD5E-s107351--de0aa329e0b3d31d79d7ffe880831f36.nii.gz/MD5E-s107351--de0aa329e0b3d31d79d7ffe880831f36.nii.gz

Yale/sub-0050557/mri/cobra_sub-0050557_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050557/mri/cobra_sub-0050557_T1w.nii.gz

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+../../../.git/annex/objects/jV/q0/MD5E-s51312--6b559074315fb89a2fc16982b6d49c61.nii.gz/MD5E-s51312--6b559074315fb89a2fc16982b6d49c61.nii.gz

Yale/sub-0050557/mri/hammers_sub-0050557_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050557/mri/hammers_sub-0050557_T1w.nii.gz

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+../../../.git/annex/objects/PG/X1/MD5E-s158053--836c31807b55a6b44a21b80ab9accfe2.nii.gz/MD5E-s158053--836c31807b55a6b44a21b80ab9accfe2.nii.gz

Yale/sub-0050557/mri/ibsr_sub-0050557_T1w.csv

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Yale/sub-0050557/mri/ibsr_sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/it_sub-0050557_T1w_affine_reorient.mat

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Yale/sub-0050557/mri/it_sub-0050557_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/2z/79/MD5E-s284--653f932fe738ae3e3702964e69bc2787.mat/MD5E-s284--653f932fe738ae3e3702964e69bc2787.mat

Yale/sub-0050557/mri/iy_sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/julichbrain_sub-0050557_T1w.csv

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Yale/sub-0050557/mri/julichbrain_sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/lpba40_sub-0050557_T1w.csv

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Yale/sub-0050557/mri/lpba40_sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/m0wp1sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/m0wp2sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/m0wp3sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/mori_sub-0050557_T1w.csv

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Yale/sub-0050557/mri/mori_sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/mwp1sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/mwp2sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/mwp3sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/neuromorphometrics_sub-0050557_T1w.csv

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Yale/sub-0050557/mri/neuromorphometrics_sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/p0sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/p1sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/p2sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/p3sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/rp1sub-0050557_T1w_affine.nii.gz

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Yale/sub-0050557/mri/rp2sub-0050557_T1w_affine.nii.gz

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Yale/sub-0050557/mri/rp3sub-0050557_T1w_affine.nii.gz

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Yale/sub-0050557/mri/t_sub-0050557_T1w_affine_reorient.mat

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Yale/sub-0050557/mri/t_sub-0050557_T1w_rigid_reorient.mat

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Yale/sub-0050557/mri/thalamus_sub-0050557_T1w.csv

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Yale/sub-0050557/mri/thalamus_sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/wj_sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/wmisub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/wmsub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/wp0sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/wp1sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/wp2sub-0050557_T1w.nii.gz

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Yale/sub-0050557/mri/wp3sub-0050557_T1w.nii.gz

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