[DATALAD RUNCMD] Compute KKI/sub-0050823

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/KKI/sub-0050823/anat/sub-0050823_T1w.nii.gz"
 ],
 "outputs": [
  "KKI/sub-0050823"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

KKI/sub-0050823/label/catROI_sub-0050823_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pj/58/MD5E-s61406--fef72d228dfbc9d14acb3a10f76287d8.mat/MD5E-s61406--fef72d228dfbc9d14acb3a10f76287d8.mat

KKI/sub-0050823/label/catROI_sub-0050823_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0X/z2/MD5E-s188995--fe0edf713edc43a751e48a8f2d0a6f68.xml/MD5E-s188995--fe0edf713edc43a751e48a8f2d0a6f68.xml

KKI/sub-0050823/label/catROIs_sub-0050823_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/P3/KW/MD5E-s120055--ab86e8f78e6c09f4196711992a5437e5.mat/MD5E-s120055--ab86e8f78e6c09f4196711992a5437e5.mat

KKI/sub-0050823/label/catROIs_sub-0050823_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/0F/MD5E-s332141--b62030400039f4698bd76cfe60e797c2.xml/MD5E-s332141--b62030400039f4698bd76cfe60e797c2.xml

KKI/sub-0050823/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050823_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

KKI/sub-0050823/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050823_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/34/7v/MD5E-s191607--383c974f28f269de1765b177f4dd746f.nii.gz/MD5E-s191607--383c974f28f269de1765b177f4dd746f.nii.gz

KKI/sub-0050823/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050823_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

KKI/sub-0050823/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050823_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F3/p3/MD5E-s215267--883eceab06571eeb8495de8b7d531dc5.nii.gz/MD5E-s215267--883eceab06571eeb8495de8b7d531dc5.nii.gz

KKI/sub-0050823/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050823_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

KKI/sub-0050823/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050823_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V9/g2/MD5E-s275912--14e878550137af9df3bb51ad251f33bb.nii.gz/MD5E-s275912--14e878550137af9df3bb51ad251f33bb.nii.gz

KKI/sub-0050823/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050823_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

KKI/sub-0050823/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050823_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mq/1Q/MD5E-s307309--8e4612798e5e4995d8b38d0b1ff20e17.nii.gz/MD5E-s307309--8e4612798e5e4995d8b38d0b1ff20e17.nii.gz

KKI/sub-0050823/mri/Tian_Subcortex_S2_7T_sub-0050823_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

KKI/sub-0050823/mri/Tian_Subcortex_S2_7T_sub-0050823_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k2/70/MD5E-s26953--759986bc0554eb23d1756b48888d06c4.nii.gz/MD5E-s26953--759986bc0554eb23d1756b48888d06c4.nii.gz

KKI/sub-0050823/mri/aal3_sub-0050823_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

KKI/sub-0050823/mri/aal3_sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/anatomy3_sub-0050823_T1w.csv

@@ -0,0 +1 @@
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KKI/sub-0050823/mri/anatomy3_sub-0050823_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3f/QQ/MD5E-s155294--38f9daca18125fa96c5e3ac03cd52302.nii.gz/MD5E-s155294--38f9daca18125fa96c5e3ac03cd52302.nii.gz

KKI/sub-0050823/mri/anon_misub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/anon_msub-0050823_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fm/m1/MD5E-s12767383--62da3888d2b294f04c0a7cc073edaccc.nii.gz/MD5E-s12767383--62da3888d2b294f04c0a7cc073edaccc.nii.gz

KKI/sub-0050823/mri/cat_sub-0050823_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VZ/J1/MD5E-s112841--70a3713ec4b7c40171347c31689f5bc0.nii.gz/MD5E-s112841--70a3713ec4b7c40171347c31689f5bc0.nii.gz

KKI/sub-0050823/mri/cobra_sub-0050823_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

KKI/sub-0050823/mri/cobra_sub-0050823_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050823/mri/hammers_sub-0050823_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

KKI/sub-0050823/mri/hammers_sub-0050823_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050823/mri/ibsr_sub-0050823_T1w.csv

@@ -0,0 +1 @@
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KKI/sub-0050823/mri/ibsr_sub-0050823_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050823/mri/it_sub-0050823_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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KKI/sub-0050823/mri/it_sub-0050823_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/20/9g/MD5E-s283--0644e806672010169cb3ca584af5b9ff.mat/MD5E-s283--0644e806672010169cb3ca584af5b9ff.mat

KKI/sub-0050823/mri/iy_sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/julichbrain_sub-0050823_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

KKI/sub-0050823/mri/julichbrain_sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/lpba40_sub-0050823_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

KKI/sub-0050823/mri/lpba40_sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/m0wp1sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/m0wp2sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/m0wp3sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/mori_sub-0050823_T1w.csv

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KKI/sub-0050823/mri/mori_sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/mwp1sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/mwp2sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/mwp3sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/neuromorphometrics_sub-0050823_T1w.csv

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KKI/sub-0050823/mri/neuromorphometrics_sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/p0sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/p1sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/p2sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/p3sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/rp1sub-0050823_T1w_affine.nii.gz

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KKI/sub-0050823/mri/rp2sub-0050823_T1w_affine.nii.gz

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KKI/sub-0050823/mri/rp3sub-0050823_T1w_affine.nii.gz

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KKI/sub-0050823/mri/t_sub-0050823_T1w_affine_reorient.mat

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KKI/sub-0050823/mri/t_sub-0050823_T1w_rigid_reorient.mat

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KKI/sub-0050823/mri/thalamus_sub-0050823_T1w.csv

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KKI/sub-0050823/mri/thalamus_sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/wj_sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/wmisub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/wmsub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/wp0sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/wp1sub-0050823_T1w.nii.gz

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KKI/sub-0050823/mri/wp2sub-0050823_T1w.nii.gz

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