[DATALAD RUNCMD] Compute SDSU/sub-0050199

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/SDSU/sub-0050199/anat/sub-0050199_T1w.nii.gz"
 ],
 "outputs": [
  "SDSU/sub-0050199"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SDSU/sub-0050199/label/catROI_sub-0050199_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/z9/Mk/MD5E-s57910--1104330b6c74f83ffee1a06ccc0f04cd.mat/MD5E-s57910--1104330b6c74f83ffee1a06ccc0f04cd.mat

SDSU/sub-0050199/label/catROI_sub-0050199_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/GZ/Fk/MD5E-s189111--797d7ae17ab35ee4e6483c8032923876.xml/MD5E-s189111--797d7ae17ab35ee4e6483c8032923876.xml

SDSU/sub-0050199/label/catROIs_sub-0050199_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0P/pV/MD5E-s120107--206e6f9f187e226f45fa539a09d1946b.mat/MD5E-s120107--206e6f9f187e226f45fa539a09d1946b.mat

SDSU/sub-0050199/label/catROIs_sub-0050199_T1w.xml

@@ -0,0 +1 @@
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SDSU/sub-0050199/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050199_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SDSU/sub-0050199/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050199_T1w.csv

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SDSU/sub-0050199/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050199_T1w.csv

@@ -0,0 +1 @@
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SDSU/sub-0050199/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050199_T1w.csv

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SDSU/sub-0050199/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050199_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pz/vf/MD5E-s275937--8541678bf2982a319bfba9938750c27b.nii.gz/MD5E-s275937--8541678bf2982a319bfba9938750c27b.nii.gz

SDSU/sub-0050199/mri/Tian_Subcortex_S2_7T_sub-0050199_T1w.csv

@@ -0,0 +1 @@
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SDSU/sub-0050199/mri/Tian_Subcortex_S2_7T_sub-0050199_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050199/mri/aal3_sub-0050199_T1w.csv

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SDSU/sub-0050199/mri/aal3_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/anatomy3_sub-0050199_T1w.csv

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SDSU/sub-0050199/mri/anatomy3_sub-0050199_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050199/mri/anon_misub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/anon_msub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/cat_sub-0050199_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050199/mri/cobra_sub-0050199_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SDSU/sub-0050199/mri/cobra_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/hammers_sub-0050199_T1w.csv

@@ -0,0 +1 @@
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SDSU/sub-0050199/mri/hammers_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/ibsr_sub-0050199_T1w.csv

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SDSU/sub-0050199/mri/ibsr_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/it_sub-0050199_T1w_affine_reorient.mat

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SDSU/sub-0050199/mri/it_sub-0050199_T1w_rigid_reorient.mat

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SDSU/sub-0050199/mri/iy_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/julichbrain_sub-0050199_T1w.csv

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SDSU/sub-0050199/mri/julichbrain_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/lpba40_sub-0050199_T1w.csv

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SDSU/sub-0050199/mri/lpba40_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/m0wp1sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/m0wp2sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/m0wp3sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/mori_sub-0050199_T1w.csv

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SDSU/sub-0050199/mri/mori_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/mwp1sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/mwp2sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/mwp3sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/neuromorphometrics_sub-0050199_T1w.csv

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SDSU/sub-0050199/mri/neuromorphometrics_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/p0sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/p1sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/p2sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/p3sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/rp1sub-0050199_T1w_affine.nii.gz

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SDSU/sub-0050199/mri/rp2sub-0050199_T1w_affine.nii.gz

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SDSU/sub-0050199/mri/rp3sub-0050199_T1w_affine.nii.gz

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SDSU/sub-0050199/mri/t_sub-0050199_T1w_affine_reorient.mat

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SDSU/sub-0050199/mri/t_sub-0050199_T1w_rigid_reorient.mat

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SDSU/sub-0050199/mri/thalamus_sub-0050199_T1w.csv

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SDSU/sub-0050199/mri/thalamus_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/wj_sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/wmisub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/wp0sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/wp1sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/wp2sub-0050199_T1w.nii.gz

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SDSU/sub-0050199/mri/wp3sub-0050199_T1w.nii.gz

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