[DATALAD RUNCMD] Compute UM_1/sub-0050360

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050360/anat/sub-0050360_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050360"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050360/label/catROI_sub-0050360_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/4X/Xx/MD5E-s61467--d186d32ad076f73c3d3ea933fe256b1a.mat/MD5E-s61467--d186d32ad076f73c3d3ea933fe256b1a.mat

UM_1/sub-0050360/label/catROI_sub-0050360_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/wx/FX/MD5E-s189171--5e9d56100ad73691e5264d5e69166066.xml/MD5E-s189171--5e9d56100ad73691e5264d5e69166066.xml

UM_1/sub-0050360/label/catROIs_sub-0050360_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZX/9M/MD5E-s120149--092cb07873302f9b32ac6fc323bb3b0f.mat/MD5E-s120149--092cb07873302f9b32ac6fc323bb3b0f.mat

UM_1/sub-0050360/label/catROIs_sub-0050360_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/7Q/MD5E-s332138--5a0953a8cd917183d2f6f05c9be60c95.xml/MD5E-s332138--5a0953a8cd917183d2f6f05c9be60c95.xml

UM_1/sub-0050360/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050360_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050360/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050360_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vv/6x/MD5E-s133605--6b8a372cf1d6dd3686dbcb38f37d0eed.nii.gz/MD5E-s133605--6b8a372cf1d6dd3686dbcb38f37d0eed.nii.gz

UM_1/sub-0050360/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050360_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050360/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050360_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7q/50/MD5E-s149536--927b5f2ab0477bd8bfeb2c57489b3212.nii.gz/MD5E-s149536--927b5f2ab0477bd8bfeb2c57489b3212.nii.gz

UM_1/sub-0050360/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050360_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050360/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050360_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zM/3v/MD5E-s186335--86b74cfd4f89deeffa3259f2fa930f96.nii.gz/MD5E-s186335--86b74cfd4f89deeffa3259f2fa930f96.nii.gz

UM_1/sub-0050360/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050360_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050360/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050360_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/24/kk/MD5E-s207763--d4cfcb2a91c4924a606730bd4900e13d.nii.gz/MD5E-s207763--d4cfcb2a91c4924a606730bd4900e13d.nii.gz

UM_1/sub-0050360/mri/Tian_Subcortex_S2_7T_sub-0050360_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050360/mri/Tian_Subcortex_S2_7T_sub-0050360_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1G/Fx/MD5E-s16560--bc24f89d996d7c913f3e97e659142cbd.nii.gz/MD5E-s16560--bc24f89d996d7c913f3e97e659142cbd.nii.gz

UM_1/sub-0050360/mri/aal3_sub-0050360_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050360/mri/aal3_sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/anatomy3_sub-0050360_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050360/mri/anatomy3_sub-0050360_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JG/P9/MD5E-s106581--95585cf46068e2a7f0ff096b17911d05.nii.gz/MD5E-s106581--95585cf46068e2a7f0ff096b17911d05.nii.gz

UM_1/sub-0050360/mri/anon_misub-0050360_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050360/mri/anon_msub-0050360_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jm/JG/MD5E-s6982252--60e06d7c3761777401c84cfeb4ee6163.nii.gz/MD5E-s6982252--60e06d7c3761777401c84cfeb4ee6163.nii.gz

UM_1/sub-0050360/mri/cat_sub-0050360_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vj/f7/MD5E-s77882--980706a82bdb2e6fa2ab68ea5fe90129.nii.gz/MD5E-s77882--980706a82bdb2e6fa2ab68ea5fe90129.nii.gz

UM_1/sub-0050360/mri/cobra_sub-0050360_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050360/mri/cobra_sub-0050360_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4K/03/MD5E-s36187--c1e2ad6c77a0d008862b72dcfac31c3e.nii.gz/MD5E-s36187--c1e2ad6c77a0d008862b72dcfac31c3e.nii.gz

UM_1/sub-0050360/mri/hammers_sub-0050360_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050360/mri/hammers_sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/ibsr_sub-0050360_T1w.csv

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UM_1/sub-0050360/mri/ibsr_sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/it_sub-0050360_T1w_affine_reorient.mat

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UM_1/sub-0050360/mri/it_sub-0050360_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/74/wF/MD5E-s283--f9f40edab4ab6ab6c6a3235f0263505a.mat/MD5E-s283--f9f40edab4ab6ab6c6a3235f0263505a.mat

UM_1/sub-0050360/mri/iy_sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/julichbrain_sub-0050360_T1w.csv

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UM_1/sub-0050360/mri/julichbrain_sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/lpba40_sub-0050360_T1w.csv

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UM_1/sub-0050360/mri/lpba40_sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/m0wp1sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/m0wp2sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/m0wp3sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/mori_sub-0050360_T1w.csv

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UM_1/sub-0050360/mri/mori_sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/mwp1sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/mwp2sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/mwp3sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/neuromorphometrics_sub-0050360_T1w.csv

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UM_1/sub-0050360/mri/neuromorphometrics_sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/p0sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/p1sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/p2sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/p3sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/rp1sub-0050360_T1w_affine.nii.gz

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UM_1/sub-0050360/mri/rp2sub-0050360_T1w_affine.nii.gz

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UM_1/sub-0050360/mri/rp3sub-0050360_T1w_affine.nii.gz

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UM_1/sub-0050360/mri/t_sub-0050360_T1w_affine_reorient.mat

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UM_1/sub-0050360/mri/t_sub-0050360_T1w_rigid_reorient.mat

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UM_1/sub-0050360/mri/thalamus_sub-0050360_T1w.csv

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UM_1/sub-0050360/mri/thalamus_sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/wj_sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/wmisub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/wmsub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/wp0sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/wp1sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/wp2sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/wp3sub-0050360_T1w.nii.gz

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UM_1/sub-0050360/mri/y_sub-0050360_T1w.nii.gz

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