[DATALAD RUNCMD] Compute Leuven_1/sub-0050706

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_1/sub-0050706/anat/sub-0050706_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_1/sub-0050706"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_1/sub-0050706/label/catROI_sub-0050706_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/v0/gX/MD5E-s61292--060b403c6effb9979656b0fa053e7010.mat/MD5E-s61292--060b403c6effb9979656b0fa053e7010.mat

Leuven_1/sub-0050706/label/catROI_sub-0050706_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/VJ/J8/MD5E-s188851--4dbcdfbb2b6006e9be518039cd86b961.xml/MD5E-s188851--4dbcdfbb2b6006e9be518039cd86b961.xml

Leuven_1/sub-0050706/label/catROIs_sub-0050706_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3Q/9X/MD5E-s120024--d17eb2005767e99b3c271ebd80bafd3f.mat/MD5E-s120024--d17eb2005767e99b3c271ebd80bafd3f.mat

Leuven_1/sub-0050706/label/catROIs_sub-0050706_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/K8/9z/MD5E-s332160--0358ef6850cf8337532cd7f3e4e9f728.xml/MD5E-s332160--0358ef6850cf8337532cd7f3e4e9f728.xml

Leuven_1/sub-0050706/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_1/sub-0050706/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2X/2f/MD5E-s177052--8cbcb6c2af1421e6d9866229a5b56c26.nii.gz/MD5E-s177052--8cbcb6c2af1421e6d9866229a5b56c26.nii.gz

Leuven_1/sub-0050706/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_1/sub-0050706/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W7/q9/MD5E-s197585--d54654a93043c3d7f0dc46cecf878cb8.nii.gz/MD5E-s197585--d54654a93043c3d7f0dc46cecf878cb8.nii.gz

Leuven_1/sub-0050706/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_1/sub-0050706/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wQ/Xm/MD5E-s251685--31e518bafa9b6bf7f562e5018e531b5d.nii.gz/MD5E-s251685--31e518bafa9b6bf7f562e5018e531b5d.nii.gz

Leuven_1/sub-0050706/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_1/sub-0050706/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/ZF/MD5E-s280148--e2a7af4c1a44a741d69227377819bd60.nii.gz/MD5E-s280148--e2a7af4c1a44a741d69227377819bd60.nii.gz

Leuven_1/sub-0050706/mri/Tian_Subcortex_S2_7T_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_1/sub-0050706/mri/Tian_Subcortex_S2_7T_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0g/ZW/MD5E-s25353--6730aaa8fb29e3fa61db29337ad83241.nii.gz/MD5E-s25353--6730aaa8fb29e3fa61db29337ad83241.nii.gz

Leuven_1/sub-0050706/mri/aal3_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_1/sub-0050706/mri/aal3_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050706/mri/anatomy3_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_1/sub-0050706/mri/anatomy3_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g4/f1/MD5E-s142051--774fc0a1da1ec694ee45067d32573dd0.nii.gz/MD5E-s142051--774fc0a1da1ec694ee45067d32573dd0.nii.gz

Leuven_1/sub-0050706/mri/anon_misub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9v/fW/MD5E-s5378764--4da68f8995a0d7c89a5ba8f482b39d1a.nii.gz/MD5E-s5378764--4da68f8995a0d7c89a5ba8f482b39d1a.nii.gz

Leuven_1/sub-0050706/mri/anon_msub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WJ/1Q/MD5E-s11970478--1b018d207ff4c7ee4f1631449725d88d.nii.gz/MD5E-s11970478--1b018d207ff4c7ee4f1631449725d88d.nii.gz

Leuven_1/sub-0050706/mri/cat_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZG/zG/MD5E-s102468--1f195c6d71344816abf2e14ae9247196.nii.gz/MD5E-s102468--1f195c6d71344816abf2e14ae9247196.nii.gz

Leuven_1/sub-0050706/mri/cobra_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_1/sub-0050706/mri/cobra_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/53/Z7/MD5E-s48706--b4b853ffa836567282048d1cedeeebc3.nii.gz/MD5E-s48706--b4b853ffa836567282048d1cedeeebc3.nii.gz

Leuven_1/sub-0050706/mri/hammers_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_1/sub-0050706/mri/hammers_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/87/0w/MD5E-s154145--a9779ffc13845063509f16470c442faf.nii.gz/MD5E-s154145--a9779ffc13845063509f16470c442faf.nii.gz

Leuven_1/sub-0050706/mri/ibsr_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_1/sub-0050706/mri/ibsr_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x8/zJ/MD5E-s159023--563ee453a7f47c0b0333df5d235a4e8f.nii.gz/MD5E-s159023--563ee453a7f47c0b0333df5d235a4e8f.nii.gz

Leuven_1/sub-0050706/mri/it_sub-0050706_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2f/2f/MD5E-s283--dde09d998916c9845350c2b503294ac8.mat/MD5E-s283--dde09d998916c9845350c2b503294ac8.mat

Leuven_1/sub-0050706/mri/it_sub-0050706_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gZ/8J/MD5E-s282--8f4ae623ef2da65d9a34dbf5315f7b72.mat/MD5E-s282--8f4ae623ef2da65d9a34dbf5315f7b72.mat

Leuven_1/sub-0050706/mri/iy_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/80/Q3/MD5E-s43458025--b7749d2ae504053c07b5b2b289d60bd6.nii.gz/MD5E-s43458025--b7749d2ae504053c07b5b2b289d60bd6.nii.gz

Leuven_1/sub-0050706/mri/julichbrain_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_1/sub-0050706/mri/julichbrain_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1j/z4/MD5E-s210111--5d2f89c21583945273bb941b13a34b63.nii.gz/MD5E-s210111--5d2f89c21583945273bb941b13a34b63.nii.gz

Leuven_1/sub-0050706/mri/lpba40_sub-0050706_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Leuven_1/sub-0050706/mri/lpba40_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050706/mri/m0wp1sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050706/mri/m0wp2sub-0050706_T1w.nii.gz

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Leuven_1/sub-0050706/mri/m0wp3sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050706/mri/mori_sub-0050706_T1w.csv

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Leuven_1/sub-0050706/mri/mori_sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050706/mri/mwp1sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050706/mri/mwp2sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x1/vZ/MD5E-s2302971--0d86870e10228c55cf0ce517e9540eb4.nii.gz/MD5E-s2302971--0d86870e10228c55cf0ce517e9540eb4.nii.gz

Leuven_1/sub-0050706/mri/mwp3sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fz/MJ/MD5E-s2537818--7d2a2fcbf8fd06ce9a2440dbe2498d37.nii.gz/MD5E-s2537818--7d2a2fcbf8fd06ce9a2440dbe2498d37.nii.gz

Leuven_1/sub-0050706/mri/neuromorphometrics_sub-0050706_T1w.csv

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Leuven_1/sub-0050706/mri/neuromorphometrics_sub-0050706_T1w.nii.gz

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Leuven_1/sub-0050706/mri/p0sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j1/5M/MD5E-s648565--108a6f54ef86b2e7ba0bc9faeb8c4f71.nii.gz/MD5E-s648565--108a6f54ef86b2e7ba0bc9faeb8c4f71.nii.gz

Leuven_1/sub-0050706/mri/p1sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050706/mri/p2sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050706/mri/p3sub-0050706_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050706/mri/rp1sub-0050706_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FK/78/MD5E-s465935--f41c7b945eb7ea59db7c60a6f13f45e0.nii.gz/MD5E-s465935--f41c7b945eb7ea59db7c60a6f13f45e0.nii.gz

Leuven_1/sub-0050706/mri/rp2sub-0050706_T1w_affine.nii.gz

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Leuven_1/sub-0050706/mri/rp3sub-0050706_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9Q/vp/MD5E-s306231--11baff6027e80ce5ae758b4dfa31b75f.nii.gz/MD5E-s306231--11baff6027e80ce5ae758b4dfa31b75f.nii.gz

Leuven_1/sub-0050706/mri/t_sub-0050706_T1w_affine_reorient.mat

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Leuven_1/sub-0050706/mri/t_sub-0050706_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/kJ/v8/MD5E-s283--a8855064e57c05769a2d9ffb959b3ed1.mat/MD5E-s283--a8855064e57c05769a2d9ffb959b3ed1.mat

Leuven_1/sub-0050706/mri/thalamus_sub-0050706_T1w.csv

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Leuven_1/sub-0050706/mri/thalamus_sub-0050706_T1w.nii.gz

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Leuven_1/sub-0050706/mri/wj_sub-0050706_T1w.nii.gz

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Leuven_1/sub-0050706/mri/wmisub-0050706_T1w.nii.gz

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Leuven_1/sub-0050706/mri/wmsub-0050706_T1w.nii.gz

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Leuven_1/sub-0050706/mri/wp0sub-0050706_T1w.nii.gz

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Leuven_1/sub-0050706/mri/wp1sub-0050706_T1w.nii.gz

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