[DATALAD RUNCMD] Compute MaxMun_c/sub-0051347

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_c/sub-0051347/anat/sub-0051347_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_c/sub-0051347"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_c/sub-0051347/label/catROI_sub-0051347_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F4/3f/MD5E-s57969--496a4ac7e6f9f4c60903f42b6ebe0247.mat/MD5E-s57969--496a4ac7e6f9f4c60903f42b6ebe0247.mat

MaxMun_c/sub-0051347/label/catROI_sub-0051347_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qp/Fg/MD5E-s188529--064d4c871204cb5b9842acf958098b84.xml/MD5E-s188529--064d4c871204cb5b9842acf958098b84.xml

MaxMun_c/sub-0051347/label/catROIs_sub-0051347_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zV/m1/MD5E-s120131--bc320b3f63d66084d38da19f5c5da051.mat/MD5E-s120131--bc320b3f63d66084d38da19f5c5da051.mat

MaxMun_c/sub-0051347/label/catROIs_sub-0051347_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1G/33/MD5E-s332099--78c5e785412ae10a7f64f5e0181baf9c.xml/MD5E-s332099--78c5e785412ae10a7f64f5e0181baf9c.xml

MaxMun_c/sub-0051347/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_c/sub-0051347/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/35/2F/MD5E-s175444--40b8e5b9a1f2feba91ddf88b53c73950.nii.gz/MD5E-s175444--40b8e5b9a1f2feba91ddf88b53c73950.nii.gz

MaxMun_c/sub-0051347/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_c/sub-0051347/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/28/j0/MD5E-s196775--40cbec7a24865af4c809218dbd1f7b30.nii.gz/MD5E-s196775--40cbec7a24865af4c809218dbd1f7b30.nii.gz

MaxMun_c/sub-0051347/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_c/sub-0051347/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kq/fV/MD5E-s265593--7a99d693671bbb842714b81bb34fef95.nii.gz/MD5E-s265593--7a99d693671bbb842714b81bb34fef95.nii.gz

MaxMun_c/sub-0051347/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_c/sub-0051347/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fx/mz/MD5E-s295476--a3e181effe2adb0d2282e8e30e599de9.nii.gz/MD5E-s295476--a3e181effe2adb0d2282e8e30e599de9.nii.gz

MaxMun_c/sub-0051347/mri/Tian_Subcortex_S2_7T_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_c/sub-0051347/mri/Tian_Subcortex_S2_7T_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/38/Vf/MD5E-s23065--1d4f11c0768f36c890d8d82862c7430f.nii.gz/MD5E-s23065--1d4f11c0768f36c890d8d82862c7430f.nii.gz

MaxMun_c/sub-0051347/mri/aal3_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_c/sub-0051347/mri/aal3_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z5/p2/MD5E-s198567--6be2f446fe7a3cd2d1f9fd91ce694596.nii.gz/MD5E-s198567--6be2f446fe7a3cd2d1f9fd91ce694596.nii.gz

MaxMun_c/sub-0051347/mri/anatomy3_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_c/sub-0051347/mri/anatomy3_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/19/ZG/MD5E-s143144--a54377f80d570048d0bf47285bbfa83b.nii.gz/MD5E-s143144--a54377f80d570048d0bf47285bbfa83b.nii.gz

MaxMun_c/sub-0051347/mri/anon_misub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mq/q3/MD5E-s8783911--40123feb6d3fe4ed49c485a9ff0aab96.nii.gz/MD5E-s8783911--40123feb6d3fe4ed49c485a9ff0aab96.nii.gz

MaxMun_c/sub-0051347/mri/anon_msub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p1/pM/MD5E-s9051414--33241503c2359a4c15ca7c60b1c768ad.nii.gz/MD5E-s9051414--33241503c2359a4c15ca7c60b1c768ad.nii.gz

MaxMun_c/sub-0051347/mri/cat_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0F/Fv/MD5E-s104671--d27a69ef68f49430d96c2251ad8fc93d.nii.gz/MD5E-s104671--d27a69ef68f49430d96c2251ad8fc93d.nii.gz

MaxMun_c/sub-0051347/mri/cobra_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_c/sub-0051347/mri/cobra_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5x/JP/MD5E-s48849--179eedc55f2da3320f065a9b9238a7f7.nii.gz/MD5E-s48849--179eedc55f2da3320f065a9b9238a7f7.nii.gz

MaxMun_c/sub-0051347/mri/hammers_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_c/sub-0051347/mri/hammers_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kw/P5/MD5E-s155710--502d25c0b2f20e87ad61168d32ccc3fb.nii.gz/MD5E-s155710--502d25c0b2f20e87ad61168d32ccc3fb.nii.gz

MaxMun_c/sub-0051347/mri/ibsr_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_c/sub-0051347/mri/ibsr_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z7/m8/MD5E-s162716--b0dfe5d89b4233f04e1521468a7c51b8.nii.gz/MD5E-s162716--b0dfe5d89b4233f04e1521468a7c51b8.nii.gz

MaxMun_c/sub-0051347/mri/it_sub-0051347_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/GZ/3G/MD5E-s283--db49fab0a20726515867374e9d9f2858.mat/MD5E-s283--db49fab0a20726515867374e9d9f2858.mat

MaxMun_c/sub-0051347/mri/it_sub-0051347_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/PF/93/MD5E-s283--deecbe5f23bbb7cf6a1b319db629d4f5.mat/MD5E-s283--deecbe5f23bbb7cf6a1b319db629d4f5.mat

MaxMun_c/sub-0051347/mri/iy_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6p/89/MD5E-s49171211--4a1f75d7e39862adfcf0cf9080cec2bc.nii.gz/MD5E-s49171211--4a1f75d7e39862adfcf0cf9080cec2bc.nii.gz

MaxMun_c/sub-0051347/mri/julichbrain_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MaxMun_c/sub-0051347/mri/julichbrain_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4w/F4/MD5E-s212424--e40628c354546f1055c0c5e1d68bff94.nii.gz/MD5E-s212424--e40628c354546f1055c0c5e1d68bff94.nii.gz

MaxMun_c/sub-0051347/mri/lpba40_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MaxMun_c/sub-0051347/mri/lpba40_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/m0wp1sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5X/3g/MD5E-s2580784--78a56ae3362881b82fbdc98cc19e8f23.nii.gz/MD5E-s2580784--78a56ae3362881b82fbdc98cc19e8f23.nii.gz

MaxMun_c/sub-0051347/mri/m0wp2sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/m0wp3sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/mori_sub-0051347_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MaxMun_c/sub-0051347/mri/mori_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/mwp1sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/83/XV/MD5E-s2581027--52db80b204873e1d427cd0c2434ad786.nii.gz/MD5E-s2581027--52db80b204873e1d427cd0c2434ad786.nii.gz

MaxMun_c/sub-0051347/mri/mwp2sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/mwp3sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/neuromorphometrics_sub-0051347_T1w.csv

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/neuromorphometrics_sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/p0sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/p1sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/p2sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/p3sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/rp1sub-0051347_T1w_affine.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/rp2sub-0051347_T1w_affine.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/rp3sub-0051347_T1w_affine.nii.gz

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MaxMun_c/sub-0051347/mri/t_sub-0051347_T1w_affine_reorient.mat

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MaxMun_c/sub-0051347/mri/t_sub-0051347_T1w_rigid_reorient.mat

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MaxMun_c/sub-0051347/mri/thalamus_sub-0051347_T1w.csv

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MaxMun_c/sub-0051347/mri/thalamus_sub-0051347_T1w.nii.gz

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MaxMun_c/sub-0051347/mri/wj_sub-0051347_T1w.nii.gz

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MaxMun_c/sub-0051347/mri/wmisub-0051347_T1w.nii.gz

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MaxMun_c/sub-0051347/mri/wmsub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/wp0sub-0051347_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051347/mri/wp1sub-0051347_T1w.nii.gz

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