[DATALAD RUNCMD] Compute Trinity/sub-0050235

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050235/anat/sub-0050235_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050235"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050235/label/catROI_sub-0050235_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/54/QW/MD5E-s61301--8daab887e67f7f1e27801da997910613.mat/MD5E-s61301--8daab887e67f7f1e27801da997910613.mat

Trinity/sub-0050235/label/catROI_sub-0050235_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/JK/jf/MD5E-s188738--fef25c5e63c5c72cf148c4cf281edc49.xml/MD5E-s188738--fef25c5e63c5c72cf148c4cf281edc49.xml

Trinity/sub-0050235/label/catROIs_sub-0050235_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/W1/1f/MD5E-s120084--e0d55966024962d04545b6ba1e1ce4e7.mat/MD5E-s120084--e0d55966024962d04545b6ba1e1ce4e7.mat

Trinity/sub-0050235/label/catROIs_sub-0050235_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/xx/JX/MD5E-s332132--9104ba81b822a535a1e7adb8cf325165.xml/MD5E-s332132--9104ba81b822a535a1e7adb8cf325165.xml

Trinity/sub-0050235/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050235_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0050235/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050235_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9w/5z/MD5E-s166972--385bd2cf68e4aef926c2124d82fb8e22.nii.gz/MD5E-s166972--385bd2cf68e4aef926c2124d82fb8e22.nii.gz

Trinity/sub-0050235/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050235_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050235/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050235_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050235/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050235_T1w.csv

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Trinity/sub-0050235/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050235_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mW/4F/MD5E-s279580--776d87e3dbb1f10578391fcf8a20b292.nii.gz/MD5E-s279580--776d87e3dbb1f10578391fcf8a20b292.nii.gz

Trinity/sub-0050235/mri/Tian_Subcortex_S2_7T_sub-0050235_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050235/mri/Tian_Subcortex_S2_7T_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/aal3_sub-0050235_T1w.csv

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Trinity/sub-0050235/mri/aal3_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/anatomy3_sub-0050235_T1w.csv

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Trinity/sub-0050235/mri/anatomy3_sub-0050235_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050235/mri/anon_misub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/anon_msub-0050235_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050235/mri/cat_sub-0050235_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050235/mri/cobra_sub-0050235_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050235/mri/cobra_sub-0050235_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050235/mri/hammers_sub-0050235_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0050235/mri/hammers_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/ibsr_sub-0050235_T1w.csv

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Trinity/sub-0050235/mri/ibsr_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/it_sub-0050235_T1w_affine_reorient.mat

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Trinity/sub-0050235/mri/it_sub-0050235_T1w_rigid_reorient.mat

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Trinity/sub-0050235/mri/iy_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/julichbrain_sub-0050235_T1w.csv

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Trinity/sub-0050235/mri/julichbrain_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/lpba40_sub-0050235_T1w.csv

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Trinity/sub-0050235/mri/lpba40_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/m0wp1sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/m0wp2sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/m0wp3sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/mori_sub-0050235_T1w.csv

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Trinity/sub-0050235/mri/mori_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/mwp1sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/mwp2sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/mwp3sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/neuromorphometrics_sub-0050235_T1w.csv

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Trinity/sub-0050235/mri/neuromorphometrics_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/p0sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/p1sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/p2sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/p3sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/rp1sub-0050235_T1w_affine.nii.gz

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Trinity/sub-0050235/mri/rp2sub-0050235_T1w_affine.nii.gz

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Trinity/sub-0050235/mri/rp3sub-0050235_T1w_affine.nii.gz

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Trinity/sub-0050235/mri/t_sub-0050235_T1w_affine_reorient.mat

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Trinity/sub-0050235/mri/t_sub-0050235_T1w_rigid_reorient.mat

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Trinity/sub-0050235/mri/thalamus_sub-0050235_T1w.csv

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Trinity/sub-0050235/mri/wj_sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/wmisub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/wmsub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/wp1sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/wp2sub-0050235_T1w.nii.gz

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Trinity/sub-0050235/mri/wp3sub-0050235_T1w.nii.gz

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