[DATALAD RUNCMD] Compute MaxMun_a/sub-0051362

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_a/sub-0051362/anat/sub-0051362_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_a/sub-0051362"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_a/sub-0051362/label/catROI_sub-0051362_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qv/FP/MD5E-s57726--eb93f77a69abf858d4e3554ee1823585.mat/MD5E-s57726--eb93f77a69abf858d4e3554ee1823585.mat

MaxMun_a/sub-0051362/label/catROI_sub-0051362_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/K0/Z9/MD5E-s189055--3569487704268e5b5c9ad77af2c9b853.xml/MD5E-s189055--3569487704268e5b5c9ad77af2c9b853.xml

MaxMun_a/sub-0051362/label/catROIs_sub-0051362_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/v8/0j/MD5E-s120216--8a5ff762923f9859c10c109812f46583.mat/MD5E-s120216--8a5ff762923f9859c10c109812f46583.mat

MaxMun_a/sub-0051362/label/catROIs_sub-0051362_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/q4/K0/MD5E-s332080--4004bcada3ee4918b9fc179635321743.xml/MD5E-s332080--4004bcada3ee4918b9fc179635321743.xml

MaxMun_a/sub-0051362/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_a/sub-0051362/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1J/40/MD5E-s153882--046aecd8a99fc6df776019b753440f46.nii.gz/MD5E-s153882--046aecd8a99fc6df776019b753440f46.nii.gz

MaxMun_a/sub-0051362/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_a/sub-0051362/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pj/jj/MD5E-s172325--bd97e4a6f7838c3721b74aba6a40937c.nii.gz/MD5E-s172325--bd97e4a6f7838c3721b74aba6a40937c.nii.gz

MaxMun_a/sub-0051362/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_a/sub-0051362/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pv/qg/MD5E-s233034--84084ab3566888647a18d2ec46e372f4.nii.gz/MD5E-s233034--84084ab3566888647a18d2ec46e372f4.nii.gz

MaxMun_a/sub-0051362/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_a/sub-0051362/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/63/k8/MD5E-s259410--997483d67307618dfb1279db30d70153.nii.gz/MD5E-s259410--997483d67307618dfb1279db30d70153.nii.gz

MaxMun_a/sub-0051362/mri/Tian_Subcortex_S2_7T_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_a/sub-0051362/mri/Tian_Subcortex_S2_7T_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KQ/Qx/MD5E-s22409--22ec82a8187411371da3dea555925d9d.nii.gz/MD5E-s22409--22ec82a8187411371da3dea555925d9d.nii.gz

MaxMun_a/sub-0051362/mri/aal3_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_a/sub-0051362/mri/aal3_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6x/pw/MD5E-s176390--25bc54d9758a26de98ebe54dbd264b12.nii.gz/MD5E-s176390--25bc54d9758a26de98ebe54dbd264b12.nii.gz

MaxMun_a/sub-0051362/mri/anatomy3_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_a/sub-0051362/mri/anatomy3_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PP/qx/MD5E-s123533--1cba80d9f1d1b66fd5b6f5215ea0a045.nii.gz/MD5E-s123533--1cba80d9f1d1b66fd5b6f5215ea0a045.nii.gz

MaxMun_a/sub-0051362/mri/anon_misub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x5/FW/MD5E-s4255528--ded755cac71a48fd0084a31432b74f30.nii.gz/MD5E-s4255528--ded755cac71a48fd0084a31432b74f30.nii.gz

MaxMun_a/sub-0051362/mri/anon_msub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZX/pw/MD5E-s8483862--f19a918d7a481fcd17a1744d91c2c661.nii.gz/MD5E-s8483862--f19a918d7a481fcd17a1744d91c2c661.nii.gz

MaxMun_a/sub-0051362/mri/cat_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p7/Xm/MD5E-s94124--022b78eff99dcf1d9070d135630a7a6c.nii.gz/MD5E-s94124--022b78eff99dcf1d9070d135630a7a6c.nii.gz

MaxMun_a/sub-0051362/mri/cobra_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_a/sub-0051362/mri/cobra_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4P/v6/MD5E-s43584--53ec62cec37cc49d70ae055032fac4a3.nii.gz/MD5E-s43584--53ec62cec37cc49d70ae055032fac4a3.nii.gz

MaxMun_a/sub-0051362/mri/hammers_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_a/sub-0051362/mri/hammers_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/68/JX/MD5E-s136415--f7f64899bbafdf1f7e59b4bb5e8ea35e.nii.gz/MD5E-s136415--f7f64899bbafdf1f7e59b4bb5e8ea35e.nii.gz

MaxMun_a/sub-0051362/mri/ibsr_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_a/sub-0051362/mri/ibsr_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZF/JZ/MD5E-s145960--8067a16d91e6645771c07a59357a3772.nii.gz/MD5E-s145960--8067a16d91e6645771c07a59357a3772.nii.gz

MaxMun_a/sub-0051362/mri/it_sub-0051362_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7P/ZM/MD5E-s284--c982b1ffe39198dbcdfd3dd6263137bc.mat/MD5E-s284--c982b1ffe39198dbcdfd3dd6263137bc.mat

MaxMun_a/sub-0051362/mri/it_sub-0051362_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/k2/xg/MD5E-s284--9047dbcc79b2a7ea2a195f511d6faa5b.mat/MD5E-s284--9047dbcc79b2a7ea2a195f511d6faa5b.mat

MaxMun_a/sub-0051362/mri/iy_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x3/Z6/MD5E-s43100467--6b6e4e3bdcac37f28a719cc488209300.nii.gz/MD5E-s43100467--6b6e4e3bdcac37f28a719cc488209300.nii.gz

MaxMun_a/sub-0051362/mri/julichbrain_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MaxMun_a/sub-0051362/mri/julichbrain_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v8/GF/MD5E-s183496--49e82acbcbc277c9684f05a5b9152dc3.nii.gz/MD5E-s183496--49e82acbcbc277c9684f05a5b9152dc3.nii.gz

MaxMun_a/sub-0051362/mri/lpba40_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MaxMun_a/sub-0051362/mri/lpba40_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7G/74/MD5E-s135795--743a387fad8ca7641f0fcc2c3a8fdf05.nii.gz/MD5E-s135795--743a387fad8ca7641f0fcc2c3a8fdf05.nii.gz

MaxMun_a/sub-0051362/mri/m0wp1sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/52/PX/MD5E-s2576694--5a58ae950bda5af5aba0bf3897103d1a.nii.gz/MD5E-s2576694--5a58ae950bda5af5aba0bf3897103d1a.nii.gz

MaxMun_a/sub-0051362/mri/m0wp2sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zz/08/MD5E-s2299608--c969f6d5f58ea726bd910b7de53e7367.nii.gz/MD5E-s2299608--c969f6d5f58ea726bd910b7de53e7367.nii.gz

MaxMun_a/sub-0051362/mri/m0wp3sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X4/K7/MD5E-s2496012--7436ec313e01a6f4f392d0cc52381c1c.nii.gz/MD5E-s2496012--7436ec313e01a6f4f392d0cc52381c1c.nii.gz

MaxMun_a/sub-0051362/mri/mori_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MaxMun_a/sub-0051362/mri/mori_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0Z/xq/MD5E-s161982--20f5485bd7387ed44180ba92de949077.nii.gz/MD5E-s161982--20f5485bd7387ed44180ba92de949077.nii.gz

MaxMun_a/sub-0051362/mri/mwp1sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jm/Wm/MD5E-s2583227--6bc8ff992d82b3ac6a38e4904f9cf85d.nii.gz/MD5E-s2583227--6bc8ff992d82b3ac6a38e4904f9cf85d.nii.gz

MaxMun_a/sub-0051362/mri/mwp2sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6v/P4/MD5E-s2296419--87bfd7415795f569ec7b3530eee58ebd.nii.gz/MD5E-s2296419--87bfd7415795f569ec7b3530eee58ebd.nii.gz

MaxMun_a/sub-0051362/mri/mwp3sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/7m/MD5E-s2492208--9749298319a20ff5cbaef733c9753f8a.nii.gz/MD5E-s2492208--9749298319a20ff5cbaef733c9753f8a.nii.gz

MaxMun_a/sub-0051362/mri/neuromorphometrics_sub-0051362_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

MaxMun_a/sub-0051362/mri/neuromorphometrics_sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051362/mri/p0sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1p/75/MD5E-s592467--601b7df9d5794d2620dd01a9a081b5dd.nii.gz/MD5E-s592467--601b7df9d5794d2620dd01a9a081b5dd.nii.gz

MaxMun_a/sub-0051362/mri/p1sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051362/mri/p2sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051362/mri/p3sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051362/mri/rp1sub-0051362_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qQ/49/MD5E-s434237--c9d77b7a23dc95dc07c4837841fcba32.nii.gz/MD5E-s434237--c9d77b7a23dc95dc07c4837841fcba32.nii.gz

MaxMun_a/sub-0051362/mri/rp2sub-0051362_T1w_affine.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051362/mri/rp3sub-0051362_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GQ/5Z/MD5E-s280939--0ede09eef862a8b58d43ea417c15704c.nii.gz/MD5E-s280939--0ede09eef862a8b58d43ea417c15704c.nii.gz

MaxMun_a/sub-0051362/mri/t_sub-0051362_T1w_affine_reorient.mat

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MaxMun_a/sub-0051362/mri/t_sub-0051362_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/GG/Pp/MD5E-s285--5adf838d5a2fbcd73cfc63ae5cae3ac5.mat/MD5E-s285--5adf838d5a2fbcd73cfc63ae5cae3ac5.mat

MaxMun_a/sub-0051362/mri/thalamus_sub-0051362_T1w.csv

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MaxMun_a/sub-0051362/mri/thalamus_sub-0051362_T1w.nii.gz

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MaxMun_a/sub-0051362/mri/wj_sub-0051362_T1w.nii.gz

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MaxMun_a/sub-0051362/mri/wmisub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051362/mri/wmsub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051362/mri/wp0sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051362/mri/wp1sub-0051362_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051362/mri/wp2sub-0051362_T1w.nii.gz

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