[DATALAD RUNCMD] Compute USM/sub-0050468

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050468/anat/sub-0050468_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050468"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050468/label/catROI_sub-0050468_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/4F/XX/MD5E-s61438--78c5a0228ab95be700bec6ced123ec03.mat/MD5E-s61438--78c5a0228ab95be700bec6ced123ec03.mat

USM/sub-0050468/label/catROI_sub-0050468_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mx/fj/MD5E-s188913--6776e655f830be3fd275969c304de0c5.xml/MD5E-s188913--6776e655f830be3fd275969c304de0c5.xml

USM/sub-0050468/label/catROIs_sub-0050468_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/GQ/fk/MD5E-s120042--d7f4eca73d565231bcef94ba67af8eea.mat/MD5E-s120042--d7f4eca73d565231bcef94ba67af8eea.mat

USM/sub-0050468/label/catROIs_sub-0050468_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xp/p6/MD5E-s332203--7b404c6c890865929305cab0adf885e4.xml/MD5E-s332203--7b404c6c890865929305cab0adf885e4.xml

USM/sub-0050468/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050468/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fw/z5/MD5E-s429181--745c65946a5ac0a178fbea8b116b0a8b.nii.gz/MD5E-s429181--745c65946a5ac0a178fbea8b116b0a8b.nii.gz

USM/sub-0050468/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050468/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WX/GV/MD5E-s477230--28d132284a0e314a650f302479abb726.nii.gz/MD5E-s477230--28d132284a0e314a650f302479abb726.nii.gz

USM/sub-0050468/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050468/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vP/kQ/MD5E-s685265--f3358faf46addf7d81c74006b7ad225a.nii.gz/MD5E-s685265--f3358faf46addf7d81c74006b7ad225a.nii.gz

USM/sub-0050468/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050468/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gM/jX/MD5E-s753559--b50ff57816e555fc419951215d00031f.nii.gz/MD5E-s753559--b50ff57816e555fc419951215d00031f.nii.gz

USM/sub-0050468/mri/Tian_Subcortex_S2_7T_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050468/mri/Tian_Subcortex_S2_7T_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gf/52/MD5E-s72189--ecfd7c46cce72b72dc35db9c091c283b.nii.gz/MD5E-s72189--ecfd7c46cce72b72dc35db9c091c283b.nii.gz

USM/sub-0050468/mri/aal3_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050468/mri/aal3_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xV/zM/MD5E-s490639--860fc7f27070087a8f5f299978ebf5f2.nii.gz/MD5E-s490639--860fc7f27070087a8f5f299978ebf5f2.nii.gz

USM/sub-0050468/mri/anatomy3_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050468/mri/anatomy3_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zW/g4/MD5E-s358217--9a6bf16f3418a9b1997f457fdd8ac0a4.nii.gz/MD5E-s358217--9a6bf16f3418a9b1997f457fdd8ac0a4.nii.gz

USM/sub-0050468/mri/anon_misub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/87/7x/MD5E-s21664113--449beb92d63c5f99398b5c6aa0988d2a.nii.gz/MD5E-s21664113--449beb92d63c5f99398b5c6aa0988d2a.nii.gz

USM/sub-0050468/mri/anon_msub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gw/pG/MD5E-s34136204--b5fa3f869fa0a794fa0c8aa4c3ed5633.nii.gz/MD5E-s34136204--b5fa3f869fa0a794fa0c8aa4c3ed5633.nii.gz

USM/sub-0050468/mri/cat_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QW/F6/MD5E-s280038--5866a2abda37f12f4f9e0f1210ffb6aa.nii.gz/MD5E-s280038--5866a2abda37f12f4f9e0f1210ffb6aa.nii.gz

USM/sub-0050468/mri/cobra_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050468/mri/cobra_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PJ/xw/MD5E-s130161--9b302cf100f54b51cda4eca91ab8ce04.nii.gz/MD5E-s130161--9b302cf100f54b51cda4eca91ab8ce04.nii.gz

USM/sub-0050468/mri/hammers_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050468/mri/hammers_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/94/Gj/MD5E-s385711--de2f46471bde64bb8be33be522abad80.nii.gz/MD5E-s385711--de2f46471bde64bb8be33be522abad80.nii.gz

USM/sub-0050468/mri/ibsr_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050468/mri/ibsr_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5v/f5/MD5E-s411878--c3a23e8c7787ecd246545136bdb7d04f.nii.gz/MD5E-s411878--c3a23e8c7787ecd246545136bdb7d04f.nii.gz

USM/sub-0050468/mri/it_sub-0050468_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kg/wK/MD5E-s283--21e5c7a56be4591348142780747d142a.mat/MD5E-s283--21e5c7a56be4591348142780747d142a.mat

USM/sub-0050468/mri/it_sub-0050468_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/j5/pf/MD5E-s282--9d74f6d8269f2434ab93f28400dbcaf6.mat/MD5E-s282--9d74f6d8269f2434ab93f28400dbcaf6.mat

USM/sub-0050468/mri/iy_sub-0050468_T1w.nii.gz

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+../../../.git/annex/objects/4K/kP/MD5E-s168788435--061700c20a2886430a05f5cbbc730ca6.nii.gz/MD5E-s168788435--061700c20a2886430a05f5cbbc730ca6.nii.gz

USM/sub-0050468/mri/julichbrain_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050468/mri/julichbrain_sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/11/18/MD5E-s507463--f14a2a5b4be2ad8d75b09df2349005d4.nii.gz/MD5E-s507463--f14a2a5b4be2ad8d75b09df2349005d4.nii.gz

USM/sub-0050468/mri/lpba40_sub-0050468_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050468/mri/lpba40_sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/m0wp1sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/m0wp2sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/m0wp3sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/mori_sub-0050468_T1w.csv

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USM/sub-0050468/mri/mori_sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/mwp1sub-0050468_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050468/mri/mwp2sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/mwp3sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/neuromorphometrics_sub-0050468_T1w.csv

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USM/sub-0050468/mri/neuromorphometrics_sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/p0sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/p1sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/p2sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/p3sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/rp1sub-0050468_T1w_affine.nii.gz

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USM/sub-0050468/mri/rp2sub-0050468_T1w_affine.nii.gz

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USM/sub-0050468/mri/rp3sub-0050468_T1w_affine.nii.gz

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USM/sub-0050468/mri/t_sub-0050468_T1w_affine_reorient.mat

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USM/sub-0050468/mri/t_sub-0050468_T1w_rigid_reorient.mat

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USM/sub-0050468/mri/thalamus_sub-0050468_T1w.csv

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USM/sub-0050468/mri/thalamus_sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/wj_sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/wmisub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/wmsub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/wp0sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/wp1sub-0050468_T1w.nii.gz

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USM/sub-0050468/mri/wp2sub-0050468_T1w.nii.gz

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