[DATALAD RUNCMD] Compute UM_2/sub-0050397

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050397/anat/sub-0050397_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050397"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050397/label/catROI_sub-0050397_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/WJ/gG/MD5E-s61372--00e7623d3af9056f75dfa4d5b8d6be80.mat/MD5E-s61372--00e7623d3af9056f75dfa4d5b8d6be80.mat

UM_2/sub-0050397/label/catROI_sub-0050397_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jG/FK/MD5E-s189117--83f21fdb62c993c841fe3bae93c6b7eb.xml/MD5E-s189117--83f21fdb62c993c841fe3bae93c6b7eb.xml

UM_2/sub-0050397/label/catROIs_sub-0050397_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pg/7w/MD5E-s120055--9e33fdee35077e5d1692e93f34eec0f8.mat/MD5E-s120055--9e33fdee35077e5d1692e93f34eec0f8.mat

UM_2/sub-0050397/label/catROIs_sub-0050397_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/FQ/28/MD5E-s332061--75dcad42d715846f69c28de283a7104e.xml/MD5E-s332061--75dcad42d715846f69c28de283a7104e.xml

UM_2/sub-0050397/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050397_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050397/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050397_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q5/5K/MD5E-s149744--a0542c14c881301f8bf5c3fed47fd4c2.nii.gz/MD5E-s149744--a0542c14c881301f8bf5c3fed47fd4c2.nii.gz

UM_2/sub-0050397/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050397_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050397/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050397_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/33/mp/MD5E-s168281--d20d438a650881fdcc1e3d45a1dd56aa.nii.gz/MD5E-s168281--d20d438a650881fdcc1e3d45a1dd56aa.nii.gz

UM_2/sub-0050397/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050397_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050397/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050397_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/99/v6/MD5E-s212816--08cb071f3157807e102ebc04df92e69a.nii.gz/MD5E-s212816--08cb071f3157807e102ebc04df92e69a.nii.gz

UM_2/sub-0050397/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050397_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050397/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050397_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VF/3Q/MD5E-s236624--859a64e2a2aef2dc89471d2b530e31a3.nii.gz/MD5E-s236624--859a64e2a2aef2dc89471d2b530e31a3.nii.gz

UM_2/sub-0050397/mri/Tian_Subcortex_S2_7T_sub-0050397_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050397/mri/Tian_Subcortex_S2_7T_sub-0050397_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WZ/Zw/MD5E-s19446--141cab6597adee38fbcbcbe057c498de.nii.gz/MD5E-s19446--141cab6597adee38fbcbcbe057c498de.nii.gz

UM_2/sub-0050397/mri/aal3_sub-0050397_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050397/mri/aal3_sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/anatomy3_sub-0050397_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050397/mri/anatomy3_sub-0050397_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vq/F8/MD5E-s119942--63915b869047c0df66a3a9b5ad4c60e4.nii.gz/MD5E-s119942--63915b869047c0df66a3a9b5ad4c60e4.nii.gz

UM_2/sub-0050397/mri/anon_misub-0050397_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050397/mri/anon_msub-0050397_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6x/0Z/MD5E-s4404933--82464fe53fd66c470468e2d601325c18.nii.gz/MD5E-s4404933--82464fe53fd66c470468e2d601325c18.nii.gz

UM_2/sub-0050397/mri/cat_sub-0050397_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5W/0G/MD5E-s89239--9bb6f22c5321b16b11026d5bbb76414d.nii.gz/MD5E-s89239--9bb6f22c5321b16b11026d5bbb76414d.nii.gz

UM_2/sub-0050397/mri/cobra_sub-0050397_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050397/mri/cobra_sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/hammers_sub-0050397_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050397/mri/hammers_sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/ibsr_sub-0050397_T1w.csv

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UM_2/sub-0050397/mri/ibsr_sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/it_sub-0050397_T1w_affine_reorient.mat

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+../../../.git/annex/objects/V0/W9/MD5E-s283--f31722c17625d8a9ba3516fd719b85db.mat/MD5E-s283--f31722c17625d8a9ba3516fd719b85db.mat

UM_2/sub-0050397/mri/it_sub-0050397_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F7/2P/MD5E-s284--03ea1fbdae65a24271f958ba67b24a8f.mat/MD5E-s284--03ea1fbdae65a24271f958ba67b24a8f.mat

UM_2/sub-0050397/mri/iy_sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/julichbrain_sub-0050397_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_2/sub-0050397/mri/julichbrain_sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/lpba40_sub-0050397_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_2/sub-0050397/mri/lpba40_sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/m0wp1sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/m0wp2sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/m0wp3sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/mori_sub-0050397_T1w.csv

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UM_2/sub-0050397/mri/mori_sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/mwp1sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/mwp2sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/mwp3sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/neuromorphometrics_sub-0050397_T1w.csv

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UM_2/sub-0050397/mri/neuromorphometrics_sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/p0sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/p1sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/p2sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/p3sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/rp1sub-0050397_T1w_affine.nii.gz

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UM_2/sub-0050397/mri/rp2sub-0050397_T1w_affine.nii.gz

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UM_2/sub-0050397/mri/rp3sub-0050397_T1w_affine.nii.gz

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UM_2/sub-0050397/mri/t_sub-0050397_T1w_affine_reorient.mat

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UM_2/sub-0050397/mri/t_sub-0050397_T1w_rigid_reorient.mat

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UM_2/sub-0050397/mri/thalamus_sub-0050397_T1w.csv

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UM_2/sub-0050397/mri/thalamus_sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/wj_sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/wmisub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/wmsub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/wp0sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/wp1sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/wp2sub-0050397_T1w.nii.gz

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UM_2/sub-0050397/mri/wp3sub-0050397_T1w.nii.gz

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