[DATALAD RUNCMD] Compute UM_1/sub-0050359

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050359/anat/sub-0050359_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050359"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050359/label/catROI_sub-0050359_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pw/P4/MD5E-s61365--82e1d3477ccf9bc16b1b5ffe75b5bb56.mat/MD5E-s61365--82e1d3477ccf9bc16b1b5ffe75b5bb56.mat

UM_1/sub-0050359/label/catROI_sub-0050359_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jx/05/MD5E-s189351--c8dd9fb4571561255dc9c7af5c742a5b.xml/MD5E-s189351--c8dd9fb4571561255dc9c7af5c742a5b.xml

UM_1/sub-0050359/label/catROIs_sub-0050359_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8p/gF/MD5E-s120235--e650fa2d44492bcdfba3d1b0bb4ffce6.mat/MD5E-s120235--e650fa2d44492bcdfba3d1b0bb4ffce6.mat

UM_1/sub-0050359/label/catROIs_sub-0050359_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jf/2K/MD5E-s332168--1ca99387de4dd87b4ebf96b595bd453b.xml/MD5E-s332168--1ca99387de4dd87b4ebf96b595bd453b.xml

UM_1/sub-0050359/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050359_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050359/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050359_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qW/Jq/MD5E-s140685--b1a8940d0d27bf7a36b13bfc2170b0aa.nii.gz/MD5E-s140685--b1a8940d0d27bf7a36b13bfc2170b0aa.nii.gz

UM_1/sub-0050359/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050359_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050359/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050359_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GF/QK/MD5E-s157075--1a69645b6400d8ebb5f0c83897c9ab31.nii.gz/MD5E-s157075--1a69645b6400d8ebb5f0c83897c9ab31.nii.gz

UM_1/sub-0050359/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050359_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050359/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050359_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050359/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050359_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050359/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050359_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/83/3p/MD5E-s223139--5d45bff393faf23f4686bd1e56325448.nii.gz/MD5E-s223139--5d45bff393faf23f4686bd1e56325448.nii.gz

UM_1/sub-0050359/mri/Tian_Subcortex_S2_7T_sub-0050359_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050359/mri/Tian_Subcortex_S2_7T_sub-0050359_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/12/WV/MD5E-s19029--de7810f4d99c51d61adc3e1de7d28221.nii.gz/MD5E-s19029--de7810f4d99c51d61adc3e1de7d28221.nii.gz

UM_1/sub-0050359/mri/aal3_sub-0050359_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050359/mri/aal3_sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/anatomy3_sub-0050359_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050359/mri/anatomy3_sub-0050359_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050359/mri/anon_misub-0050359_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050359/mri/anon_msub-0050359_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WQ/jw/MD5E-s4145605--4074b7ca8272b87e78ed029dd3ab7bbb.nii.gz/MD5E-s4145605--4074b7ca8272b87e78ed029dd3ab7bbb.nii.gz

UM_1/sub-0050359/mri/cat_sub-0050359_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qm/ZX/MD5E-s79718--3f2f4e850a96fc440bf14005d955e4ae.nii.gz/MD5E-s79718--3f2f4e850a96fc440bf14005d955e4ae.nii.gz

UM_1/sub-0050359/mri/cobra_sub-0050359_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050359/mri/cobra_sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/hammers_sub-0050359_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050359/mri/hammers_sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/ibsr_sub-0050359_T1w.csv

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UM_1/sub-0050359/mri/ibsr_sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/it_sub-0050359_T1w_affine_reorient.mat

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UM_1/sub-0050359/mri/it_sub-0050359_T1w_rigid_reorient.mat

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UM_1/sub-0050359/mri/iy_sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/julichbrain_sub-0050359_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050359/mri/julichbrain_sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/lpba40_sub-0050359_T1w.csv

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UM_1/sub-0050359/mri/lpba40_sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/m0wp1sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/m0wp2sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/m0wp3sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/mori_sub-0050359_T1w.csv

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UM_1/sub-0050359/mri/mori_sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/mwp1sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/mwp2sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/mwp3sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/neuromorphometrics_sub-0050359_T1w.csv

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UM_1/sub-0050359/mri/neuromorphometrics_sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/p0sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/p1sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/p2sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/p3sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/rp1sub-0050359_T1w_affine.nii.gz

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UM_1/sub-0050359/mri/rp2sub-0050359_T1w_affine.nii.gz

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UM_1/sub-0050359/mri/rp3sub-0050359_T1w_affine.nii.gz

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UM_1/sub-0050359/mri/t_sub-0050359_T1w_affine_reorient.mat

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UM_1/sub-0050359/mri/t_sub-0050359_T1w_rigid_reorient.mat

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UM_1/sub-0050359/mri/thalamus_sub-0050359_T1w.csv

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UM_1/sub-0050359/mri/thalamus_sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/wj_sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/wmisub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/wp0sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/wp1sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/wp2sub-0050359_T1w.nii.gz

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UM_1/sub-0050359/mri/wp3sub-0050359_T1w.nii.gz

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