[DATALAD RUNCMD] Compute Trinity/sub-0050262

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050262/anat/sub-0050262_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050262"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050262/label/catROI_sub-0050262_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xK/JV/MD5E-s61334--028e30e1b9e4b77c973c471189be0446.mat/MD5E-s61334--028e30e1b9e4b77c973c471189be0446.mat

Trinity/sub-0050262/label/catROI_sub-0050262_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/v6/14/MD5E-s188735--13c8a2e3f7fce021946f7a5d98414208.xml/MD5E-s188735--13c8a2e3f7fce021946f7a5d98414208.xml

Trinity/sub-0050262/label/catROIs_sub-0050262_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0w/MV/MD5E-s119985--35e2a0670ee8190657dfd176c36a70cc.mat/MD5E-s119985--35e2a0670ee8190657dfd176c36a70cc.mat

Trinity/sub-0050262/label/catROIs_sub-0050262_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/5k/fx/MD5E-s332096--fb506668ca750ee6f974aa28d280b021.xml/MD5E-s332096--fb506668ca750ee6f974aa28d280b021.xml

Trinity/sub-0050262/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050262_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0050262/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050262_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2X/38/MD5E-s176368--5a8f02d1a5e591872c79bf597b0258d9.nii.gz/MD5E-s176368--5a8f02d1a5e591872c79bf597b0258d9.nii.gz

Trinity/sub-0050262/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050262_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050262/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050262_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xz/7p/MD5E-s198651--655c799d3c44acacb163ee4beef09a3d.nii.gz/MD5E-s198651--655c799d3c44acacb163ee4beef09a3d.nii.gz

Trinity/sub-0050262/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050262_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Trinity/sub-0050262/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050262_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x1/M4/MD5E-s268965--4cdb017571623a567ea6f6d7ca3854ae.nii.gz/MD5E-s268965--4cdb017571623a567ea6f6d7ca3854ae.nii.gz

Trinity/sub-0050262/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050262_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Trinity/sub-0050262/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050262_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/58/K2/MD5E-s300136--b6db9dacf86000c61c9abdd7dd8a9a89.nii.gz/MD5E-s300136--b6db9dacf86000c61c9abdd7dd8a9a89.nii.gz

Trinity/sub-0050262/mri/Tian_Subcortex_S2_7T_sub-0050262_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050262/mri/Tian_Subcortex_S2_7T_sub-0050262_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Px/J0/MD5E-s24275--4c00e9b7e5e4dda8991d506c44144ba1.nii.gz/MD5E-s24275--4c00e9b7e5e4dda8991d506c44144ba1.nii.gz

Trinity/sub-0050262/mri/aal3_sub-0050262_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050262/mri/aal3_sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/anatomy3_sub-0050262_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050262/mri/anatomy3_sub-0050262_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050262/mri/anon_misub-0050262_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050262/mri/anon_msub-0050262_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g9/pP/MD5E-s9394360--e4cf6db2dc4d424a1af5107ca15ec92b.nii.gz/MD5E-s9394360--e4cf6db2dc4d424a1af5107ca15ec92b.nii.gz

Trinity/sub-0050262/mri/cat_sub-0050262_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050262/mri/cobra_sub-0050262_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Trinity/sub-0050262/mri/cobra_sub-0050262_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1q/Jq/MD5E-s50220--6fd73719f1c673593c2717677acd5b85.nii.gz/MD5E-s50220--6fd73719f1c673593c2717677acd5b85.nii.gz

Trinity/sub-0050262/mri/hammers_sub-0050262_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0050262/mri/hammers_sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/ibsr_sub-0050262_T1w.csv

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Trinity/sub-0050262/mri/ibsr_sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/it_sub-0050262_T1w_affine_reorient.mat

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Trinity/sub-0050262/mri/it_sub-0050262_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xW/mx/MD5E-s282--72f4c6ed59484383d28d3d23d72bd1c6.mat/MD5E-s282--72f4c6ed59484383d28d3d23d72bd1c6.mat

Trinity/sub-0050262/mri/iy_sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/julichbrain_sub-0050262_T1w.csv

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Trinity/sub-0050262/mri/julichbrain_sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/lpba40_sub-0050262_T1w.csv

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Trinity/sub-0050262/mri/lpba40_sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/m0wp1sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/m0wp2sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/m0wp3sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/mori_sub-0050262_T1w.csv

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Trinity/sub-0050262/mri/mori_sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/mwp1sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/mwp2sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/mwp3sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/neuromorphometrics_sub-0050262_T1w.csv

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Trinity/sub-0050262/mri/neuromorphometrics_sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/p0sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/p1sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/p2sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/p3sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/rp1sub-0050262_T1w_affine.nii.gz

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Trinity/sub-0050262/mri/rp2sub-0050262_T1w_affine.nii.gz

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Trinity/sub-0050262/mri/rp3sub-0050262_T1w_affine.nii.gz

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Trinity/sub-0050262/mri/t_sub-0050262_T1w_affine_reorient.mat

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Trinity/sub-0050262/mri/t_sub-0050262_T1w_rigid_reorient.mat

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Trinity/sub-0050262/mri/thalamus_sub-0050262_T1w.csv

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Trinity/sub-0050262/mri/thalamus_sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/wj_sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/wmisub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/wmsub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/wp0sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/wp1sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/wp2sub-0050262_T1w.nii.gz

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Trinity/sub-0050262/mri/wp3sub-0050262_T1w.nii.gz

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