[DATALAD RUNCMD] Compute Yale/sub-0050617

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050617/anat/sub-0050617_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050617"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050617/label/catROI_sub-0050617_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/62/Mx/MD5E-s57603--2b25d6eebdf204a0929be8f6ff4cd25c.mat/MD5E-s57603--2b25d6eebdf204a0929be8f6ff4cd25c.mat

Yale/sub-0050617/label/catROI_sub-0050617_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1p/5g/MD5E-s189198--c776913dbb38a48d2e314b5ec92d64ac.xml/MD5E-s189198--c776913dbb38a48d2e314b5ec92d64ac.xml

Yale/sub-0050617/label/catROIs_sub-0050617_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xq/0f/MD5E-s120287--7bb5985f9fd5f12f58ddc0d58b1b7ff7.mat/MD5E-s120287--7bb5985f9fd5f12f58ddc0d58b1b7ff7.mat

Yale/sub-0050617/label/catROIs_sub-0050617_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/61/W0/MD5E-s332237--72205cdbbe18bbd62a5508c789455b62.xml/MD5E-s332237--72205cdbbe18bbd62a5508c789455b62.xml

Yale/sub-0050617/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050617_T1w.csv

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Yale/sub-0050617/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050617_T1w.nii.gz

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+../../../.git/annex/objects/Kz/f1/MD5E-s145737--51fa744bedcade9f3ec38a86546dd4ad.nii.gz/MD5E-s145737--51fa744bedcade9f3ec38a86546dd4ad.nii.gz

Yale/sub-0050617/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050617_T1w.csv

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Yale/sub-0050617/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050617_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050617/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050617_T1w.csv

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+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050617/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/Tian_Subcortex_S2_7T_sub-0050617_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050617/mri/Tian_Subcortex_S2_7T_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/aal3_sub-0050617_T1w.csv

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Yale/sub-0050617/mri/aal3_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/anatomy3_sub-0050617_T1w.csv

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Yale/sub-0050617/mri/anatomy3_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/anon_misub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/anon_msub-0050617_T1w.nii.gz

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+../../../.git/annex/objects/Gk/ZG/MD5E-s10989265--1b70e75a061fd1e4923e83bb55fb66ee.nii.gz/MD5E-s10989265--1b70e75a061fd1e4923e83bb55fb66ee.nii.gz

Yale/sub-0050617/mri/cat_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/cobra_sub-0050617_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050617/mri/cobra_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/hammers_sub-0050617_T1w.csv

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Yale/sub-0050617/mri/hammers_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/ibsr_sub-0050617_T1w.csv

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Yale/sub-0050617/mri/ibsr_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/it_sub-0050617_T1w_affine_reorient.mat

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Yale/sub-0050617/mri/it_sub-0050617_T1w_rigid_reorient.mat

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Yale/sub-0050617/mri/iy_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/julichbrain_sub-0050617_T1w.csv

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Yale/sub-0050617/mri/julichbrain_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/lpba40_sub-0050617_T1w.csv

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Yale/sub-0050617/mri/lpba40_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/m0wp1sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/m0wp2sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/m0wp3sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/mori_sub-0050617_T1w.csv

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Yale/sub-0050617/mri/mori_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/mwp1sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/mwp2sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/mwp3sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/neuromorphometrics_sub-0050617_T1w.csv

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Yale/sub-0050617/mri/neuromorphometrics_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/p0sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/p1sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/p2sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/p3sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/rp1sub-0050617_T1w_affine.nii.gz

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Yale/sub-0050617/mri/rp2sub-0050617_T1w_affine.nii.gz

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Yale/sub-0050617/mri/rp3sub-0050617_T1w_affine.nii.gz

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Yale/sub-0050617/mri/t_sub-0050617_T1w_affine_reorient.mat

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Yale/sub-0050617/mri/t_sub-0050617_T1w_rigid_reorient.mat

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Yale/sub-0050617/mri/thalamus_sub-0050617_T1w.csv

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Yale/sub-0050617/mri/thalamus_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/wj_sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/wmisub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/wmsub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/wp0sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/wp1sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/wp2sub-0050617_T1w.nii.gz

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Yale/sub-0050617/mri/wp3sub-0050617_T1w.nii.gz

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