[DATALAD RUNCMD] Compute USM/sub-0050511

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050511/anat/sub-0050511_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050511"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050511/label/catROI_sub-0050511_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gg/Jw/MD5E-s61494--74bbaffa879c5dec948147bf9a3137de.mat/MD5E-s61494--74bbaffa879c5dec948147bf9a3137de.mat

USM/sub-0050511/label/catROI_sub-0050511_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/v0/wP/MD5E-s188767--599fc51eebcdf3b523a3db1bfb7d758a.xml/MD5E-s188767--599fc51eebcdf3b523a3db1bfb7d758a.xml

USM/sub-0050511/label/catROIs_sub-0050511_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qj/m4/MD5E-s120096--55d663cc2a03d7391be9edb9813cc7d7.mat/MD5E-s120096--55d663cc2a03d7391be9edb9813cc7d7.mat

USM/sub-0050511/label/catROIs_sub-0050511_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/XQ/P8/MD5E-s332081--7cd93479f3984fba6968848bfb11a9f1.xml/MD5E-s332081--7cd93479f3984fba6968848bfb11a9f1.xml

USM/sub-0050511/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050511/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xk/QM/MD5E-s443225--62e86b20a041eaa1a8c3d7b14f042da6.nii.gz/MD5E-s443225--62e86b20a041eaa1a8c3d7b14f042da6.nii.gz

USM/sub-0050511/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050511/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/17/zW/MD5E-s493123--f25ad3bff5f30c1aac6d4ee8905aa5fa.nii.gz/MD5E-s493123--f25ad3bff5f30c1aac6d4ee8905aa5fa.nii.gz

USM/sub-0050511/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050511/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qG/09/MD5E-s707248--f53c16cb3fb6c579432b49ab8d537d08.nii.gz/MD5E-s707248--f53c16cb3fb6c579432b49ab8d537d08.nii.gz

USM/sub-0050511/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050511/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G2/1M/MD5E-s775865--0a4058b7c4d3bc90776610a52b2472a9.nii.gz/MD5E-s775865--0a4058b7c4d3bc90776610a52b2472a9.nii.gz

USM/sub-0050511/mri/Tian_Subcortex_S2_7T_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050511/mri/Tian_Subcortex_S2_7T_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vg/J3/MD5E-s72257--0e231d97c8ef4a7a0a796e25fd69e6f7.nii.gz/MD5E-s72257--0e231d97c8ef4a7a0a796e25fd69e6f7.nii.gz

USM/sub-0050511/mri/aal3_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050511/mri/aal3_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zw/K3/MD5E-s493111--06b240443ba125a15876a498092248e8.nii.gz/MD5E-s493111--06b240443ba125a15876a498092248e8.nii.gz

USM/sub-0050511/mri/anatomy3_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050511/mri/anatomy3_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pz/Pg/MD5E-s373082--54129bcb8927ec025410e1e893924627.nii.gz/MD5E-s373082--54129bcb8927ec025410e1e893924627.nii.gz

USM/sub-0050511/mri/anon_misub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2v/J4/MD5E-s39142819--a59ee65898b68cc24554973809f2f953.nii.gz/MD5E-s39142819--a59ee65898b68cc24554973809f2f953.nii.gz

USM/sub-0050511/mri/anon_msub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pZ/X0/MD5E-s36880043--3bd9f1eeaacfa092b9c3f9ae5aa5033d.nii.gz/MD5E-s36880043--3bd9f1eeaacfa092b9c3f9ae5aa5033d.nii.gz

USM/sub-0050511/mri/cat_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k9/72/MD5E-s274687--129135bd90ad1232b48cba6a035978ed.nii.gz/MD5E-s274687--129135bd90ad1232b48cba6a035978ed.nii.gz

USM/sub-0050511/mri/cobra_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050511/mri/cobra_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vJ/P3/MD5E-s136375--8f45d95b8c032ae76f8eb17ef8b1b45f.nii.gz/MD5E-s136375--8f45d95b8c032ae76f8eb17ef8b1b45f.nii.gz

USM/sub-0050511/mri/hammers_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050511/mri/hammers_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W0/gK/MD5E-s394557--c27cb1b9c05d0bbdf646b55ae85cf8a6.nii.gz/MD5E-s394557--c27cb1b9c05d0bbdf646b55ae85cf8a6.nii.gz

USM/sub-0050511/mri/ibsr_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050511/mri/ibsr_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pq/4W/MD5E-s424964--4e5c77c6ef3ad3976f2cca6a9383d5f2.nii.gz/MD5E-s424964--4e5c77c6ef3ad3976f2cca6a9383d5f2.nii.gz

USM/sub-0050511/mri/it_sub-0050511_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/GX/zz/MD5E-s284--52ec282765fd454e3ed310c8f0191829.mat/MD5E-s284--52ec282765fd454e3ed310c8f0191829.mat

USM/sub-0050511/mri/it_sub-0050511_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pV/FG/MD5E-s284--284acc7aa2f09dc0a25e57bc4f79c5a4.mat/MD5E-s284--284acc7aa2f09dc0a25e57bc4f79c5a4.mat

USM/sub-0050511/mri/iy_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xv/9k/MD5E-s194426229--7e8f1d7a94e849a6c45317713c449ff4.nii.gz/MD5E-s194426229--7e8f1d7a94e849a6c45317713c449ff4.nii.gz

USM/sub-0050511/mri/julichbrain_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050511/mri/julichbrain_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/58/G0/MD5E-s528041--8d328f4b341bf825061a12f5145a9bd0.nii.gz/MD5E-s528041--8d328f4b341bf825061a12f5145a9bd0.nii.gz

USM/sub-0050511/mri/lpba40_sub-0050511_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050511/mri/lpba40_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050511/mri/m0wp1sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050511/mri/m0wp2sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7X/g2/MD5E-s2341456--3e5d86f8ec37c0ac4296a258686f44ed.nii.gz/MD5E-s2341456--3e5d86f8ec37c0ac4296a258686f44ed.nii.gz

USM/sub-0050511/mri/m0wp3sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X6/Mq/MD5E-s2505593--acfa9cb3db75db0100449a0d34382fbf.nii.gz/MD5E-s2505593--acfa9cb3db75db0100449a0d34382fbf.nii.gz

USM/sub-0050511/mri/mori_sub-0050511_T1w.csv

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USM/sub-0050511/mri/mori_sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050511/mri/mwp1sub-0050511_T1w.nii.gz

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USM/sub-0050511/mri/mwp2sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zq/Pq/MD5E-s2341167--377110a59917c4c085fd2c09562395e3.nii.gz/MD5E-s2341167--377110a59917c4c085fd2c09562395e3.nii.gz

USM/sub-0050511/mri/mwp3sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050511/mri/neuromorphometrics_sub-0050511_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050511/mri/neuromorphometrics_sub-0050511_T1w.nii.gz

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USM/sub-0050511/mri/p0sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g2/vj/MD5E-s4799722--b914ac1dbcf22cbef9290d56a3224703.nii.gz/MD5E-s4799722--b914ac1dbcf22cbef9290d56a3224703.nii.gz

USM/sub-0050511/mri/p1sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050511/mri/p2sub-0050511_T1w.nii.gz

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USM/sub-0050511/mri/p3sub-0050511_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050511/mri/rp1sub-0050511_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050511/mri/rp2sub-0050511_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kk/mF/MD5E-s303455--c914101cdfa877fe4026dd25c1c59de5.nii.gz/MD5E-s303455--c914101cdfa877fe4026dd25c1c59de5.nii.gz

USM/sub-0050511/mri/rp3sub-0050511_T1w_affine.nii.gz

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+../../../.git/annex/objects/pq/kk/MD5E-s272175--6c15ff0b75b5014d25c283fd3544957e.nii.gz/MD5E-s272175--6c15ff0b75b5014d25c283fd3544957e.nii.gz

USM/sub-0050511/mri/t_sub-0050511_T1w_affine_reorient.mat

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USM/sub-0050511/mri/t_sub-0050511_T1w_rigid_reorient.mat

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USM/sub-0050511/mri/thalamus_sub-0050511_T1w.csv

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USM/sub-0050511/mri/thalamus_sub-0050511_T1w.nii.gz

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USM/sub-0050511/mri/wj_sub-0050511_T1w.nii.gz

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USM/sub-0050511/mri/wmisub-0050511_T1w.nii.gz

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USM/sub-0050511/mri/wmsub-0050511_T1w.nii.gz

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USM/sub-0050511/mri/wp0sub-0050511_T1w.nii.gz

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USM/sub-0050511/mri/wp1sub-0050511_T1w.nii.gz

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USM/sub-0050511/mri/wp2sub-0050511_T1w.nii.gz

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