[DATALAD RUNCMD] Compute Trinity/sub-0050253

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050253/anat/sub-0050253_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050253"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050253/label/catROI_sub-0050253_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gx/Q9/MD5E-s61387--df44459e387ade235a23bc7a08452553.mat/MD5E-s61387--df44459e387ade235a23bc7a08452553.mat

Trinity/sub-0050253/label/catROI_sub-0050253_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/4Q/0Q/MD5E-s188754--3903c6da23c28d600b206958abc242c8.xml/MD5E-s188754--3903c6da23c28d600b206958abc242c8.xml

Trinity/sub-0050253/label/catROIs_sub-0050253_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/QK/41/MD5E-s119981--e79ab8a52d5bb323fb9393722df442b8.mat/MD5E-s119981--e79ab8a52d5bb323fb9393722df442b8.mat

Trinity/sub-0050253/label/catROIs_sub-0050253_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/X1/Wg/MD5E-s332161--b34e46dab775d81130ea12af594117f6.xml/MD5E-s332161--b34e46dab775d81130ea12af594117f6.xml

Trinity/sub-0050253/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050253_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0050253/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050253_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X9/vM/MD5E-s178723--8805b9476b6018e419b376699da89c3d.nii.gz/MD5E-s178723--8805b9476b6018e419b376699da89c3d.nii.gz

Trinity/sub-0050253/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050253_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Trinity/sub-0050253/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050253_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9x/qm/MD5E-s200497--5d78774a29faf694194a2a857eb6a3b1.nii.gz/MD5E-s200497--5d78774a29faf694194a2a857eb6a3b1.nii.gz

Trinity/sub-0050253/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050253_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Trinity/sub-0050253/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050253_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z8/Z1/MD5E-s269702--ee0c84d38abcdf6a6f1b221a6c8cc653.nii.gz/MD5E-s269702--ee0c84d38abcdf6a6f1b221a6c8cc653.nii.gz

Trinity/sub-0050253/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050253_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Trinity/sub-0050253/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050253_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jg/xz/MD5E-s300217--9afd48a77101837d96406cda4fac8279.nii.gz/MD5E-s300217--9afd48a77101837d96406cda4fac8279.nii.gz

Trinity/sub-0050253/mri/Tian_Subcortex_S2_7T_sub-0050253_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Trinity/sub-0050253/mri/Tian_Subcortex_S2_7T_sub-0050253_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vp/0P/MD5E-s23804--e444c129929dfbec1606780ebb485f4d.nii.gz/MD5E-s23804--e444c129929dfbec1606780ebb485f4d.nii.gz

Trinity/sub-0050253/mri/aal3_sub-0050253_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050253/mri/aal3_sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/anatomy3_sub-0050253_T1w.csv

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Trinity/sub-0050253/mri/anatomy3_sub-0050253_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zP/v8/MD5E-s144158--de3e816c1e64a82963ba339c7a61dc69.nii.gz/MD5E-s144158--de3e816c1e64a82963ba339c7a61dc69.nii.gz

Trinity/sub-0050253/mri/anon_misub-0050253_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050253/mri/anon_msub-0050253_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vW/v7/MD5E-s7757711--4d3dc1d78fb091a109b7e5e1c25e7c79.nii.gz/MD5E-s7757711--4d3dc1d78fb091a109b7e5e1c25e7c79.nii.gz

Trinity/sub-0050253/mri/cat_sub-0050253_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fj/Wm/MD5E-s105982--600ee1ed6280985d00bf76cadf446756.nii.gz/MD5E-s105982--600ee1ed6280985d00bf76cadf446756.nii.gz

Trinity/sub-0050253/mri/cobra_sub-0050253_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Trinity/sub-0050253/mri/cobra_sub-0050253_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/47/VV/MD5E-s48762--f15d3af58f554d69d2949f41bf749fc0.nii.gz/MD5E-s48762--f15d3af58f554d69d2949f41bf749fc0.nii.gz

Trinity/sub-0050253/mri/hammers_sub-0050253_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0050253/mri/hammers_sub-0050253_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1F/14/MD5E-s156317--8e9dd62d15d15456a978338501a62ca3.nii.gz/MD5E-s156317--8e9dd62d15d15456a978338501a62ca3.nii.gz

Trinity/sub-0050253/mri/ibsr_sub-0050253_T1w.csv

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Trinity/sub-0050253/mri/ibsr_sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/it_sub-0050253_T1w_affine_reorient.mat

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+../../../.git/annex/objects/gw/fm/MD5E-s284--52c8a11bcf26cbab9d6d293ef653f3c7.mat/MD5E-s284--52c8a11bcf26cbab9d6d293ef653f3c7.mat

Trinity/sub-0050253/mri/it_sub-0050253_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wj/77/MD5E-s283--449b9a70b0f5d1cee24c73ce51d961b0.mat/MD5E-s283--449b9a70b0f5d1cee24c73ce51d961b0.mat

Trinity/sub-0050253/mri/iy_sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/julichbrain_sub-0050253_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Trinity/sub-0050253/mri/julichbrain_sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/lpba40_sub-0050253_T1w.csv

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Trinity/sub-0050253/mri/lpba40_sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/m0wp1sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/m0wp2sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/m0wp3sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/mori_sub-0050253_T1w.csv

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Trinity/sub-0050253/mri/mori_sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/mwp1sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/mwp2sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/mwp3sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/neuromorphometrics_sub-0050253_T1w.csv

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Trinity/sub-0050253/mri/neuromorphometrics_sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/p0sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/p1sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/p2sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/p3sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/rp1sub-0050253_T1w_affine.nii.gz

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Trinity/sub-0050253/mri/rp2sub-0050253_T1w_affine.nii.gz

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Trinity/sub-0050253/mri/rp3sub-0050253_T1w_affine.nii.gz

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Trinity/sub-0050253/mri/t_sub-0050253_T1w_affine_reorient.mat

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Trinity/sub-0050253/mri/t_sub-0050253_T1w_rigid_reorient.mat

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Trinity/sub-0050253/mri/thalamus_sub-0050253_T1w.csv

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Trinity/sub-0050253/mri/thalamus_sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/wj_sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/wmisub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/wmsub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/wp0sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/wp1sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/wp2sub-0050253_T1w.nii.gz

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Trinity/sub-0050253/mri/wp3sub-0050253_T1w.nii.gz

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