[DATALAD RUNCMD] Compute UM_1/sub-0050321

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050321/anat/sub-0050321_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050321"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050321/label/catROI_sub-0050321_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/P9/kG/MD5E-s61427--4f44ad22cd5f66e9e4fbb9d997d88fe8.mat/MD5E-s61427--4f44ad22cd5f66e9e4fbb9d997d88fe8.mat

UM_1/sub-0050321/label/catROI_sub-0050321_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/kK/7V/MD5E-s188864--13b3ae0b80602eb163f7be2a94468330.xml/MD5E-s188864--13b3ae0b80602eb163f7be2a94468330.xml

UM_1/sub-0050321/label/catROIs_sub-0050321_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wp/gX/MD5E-s120086--4d959c0325c9d38ac9fd060086efefb0.mat/MD5E-s120086--4d959c0325c9d38ac9fd060086efefb0.mat

UM_1/sub-0050321/label/catROIs_sub-0050321_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/5w/gf/MD5E-s332196--9657f6f30d5561fd5e9db7a7aee278fc.xml/MD5E-s332196--9657f6f30d5561fd5e9db7a7aee278fc.xml

UM_1/sub-0050321/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050321_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050321/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050321_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M9/J6/MD5E-s167362--db24a8cff6d53f55a9b03381fbebb897.nii.gz/MD5E-s167362--db24a8cff6d53f55a9b03381fbebb897.nii.gz

UM_1/sub-0050321/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050321_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050321/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050321_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qq/wZ/MD5E-s188775--f72940535410d394367a926e3a19b499.nii.gz/MD5E-s188775--f72940535410d394367a926e3a19b499.nii.gz

UM_1/sub-0050321/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050321_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050321/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050321_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j1/pm/MD5E-s236891--b70c930f3e04ba5a016e08aa0575635a.nii.gz/MD5E-s236891--b70c930f3e04ba5a016e08aa0575635a.nii.gz

UM_1/sub-0050321/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050321_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050321/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050321_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P2/v8/MD5E-s264821--77986f5e0868fdc455e76f374a90339c.nii.gz/MD5E-s264821--77986f5e0868fdc455e76f374a90339c.nii.gz

UM_1/sub-0050321/mri/Tian_Subcortex_S2_7T_sub-0050321_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050321/mri/Tian_Subcortex_S2_7T_sub-0050321_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7K/m3/MD5E-s21296--a4dfe03cbcdb285cea218d26829ad304.nii.gz/MD5E-s21296--a4dfe03cbcdb285cea218d26829ad304.nii.gz

UM_1/sub-0050321/mri/aal3_sub-0050321_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050321/mri/aal3_sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/anatomy3_sub-0050321_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050321/mri/anatomy3_sub-0050321_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v7/vK/MD5E-s134855--b6e4b19145dd00229100ee933282ffef.nii.gz/MD5E-s134855--b6e4b19145dd00229100ee933282ffef.nii.gz

UM_1/sub-0050321/mri/anon_misub-0050321_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050321/mri/anon_msub-0050321_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Km/m3/MD5E-s7638510--5ff22fed965a7f9dce758d6356a0ea36.nii.gz/MD5E-s7638510--5ff22fed965a7f9dce758d6356a0ea36.nii.gz

UM_1/sub-0050321/mri/cat_sub-0050321_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zx/MP/MD5E-s99741--a0c0240d17dae6b4c7cf5229e81abee2.nii.gz/MD5E-s99741--a0c0240d17dae6b4c7cf5229e81abee2.nii.gz

UM_1/sub-0050321/mri/cobra_sub-0050321_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050321/mri/cobra_sub-0050321_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j0/vw/MD5E-s42140--41b92d8c7a4888a19119cf14e20038de.nii.gz/MD5E-s42140--41b92d8c7a4888a19119cf14e20038de.nii.gz

UM_1/sub-0050321/mri/hammers_sub-0050321_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050321/mri/hammers_sub-0050321_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050321/mri/ibsr_sub-0050321_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050321/mri/ibsr_sub-0050321_T1w.nii.gz

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+../../../.git/annex/objects/P6/10/MD5E-s151721--c7afe827d4dcaa7057c74547b079fbe4.nii.gz/MD5E-s151721--c7afe827d4dcaa7057c74547b079fbe4.nii.gz

UM_1/sub-0050321/mri/it_sub-0050321_T1w_affine_reorient.mat

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+../../../.git/annex/objects/20/9K/MD5E-s285--73fb748bae451df63397c7e83f618af2.mat/MD5E-s285--73fb748bae451df63397c7e83f618af2.mat

UM_1/sub-0050321/mri/it_sub-0050321_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/72/x5/MD5E-s281--b72219cd3db1e3ef9b384b6114007826.mat/MD5E-s281--b72219cd3db1e3ef9b384b6114007826.mat

UM_1/sub-0050321/mri/iy_sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/julichbrain_sub-0050321_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050321/mri/julichbrain_sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/lpba40_sub-0050321_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_1/sub-0050321/mri/lpba40_sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/m0wp1sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/m0wp2sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/m0wp3sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/mori_sub-0050321_T1w.csv

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UM_1/sub-0050321/mri/mori_sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/mwp1sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/mwp2sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/mwp3sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/neuromorphometrics_sub-0050321_T1w.csv

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UM_1/sub-0050321/mri/neuromorphometrics_sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/p0sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/p1sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/p2sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/p3sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/rp1sub-0050321_T1w_affine.nii.gz

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UM_1/sub-0050321/mri/rp2sub-0050321_T1w_affine.nii.gz

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UM_1/sub-0050321/mri/rp3sub-0050321_T1w_affine.nii.gz

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UM_1/sub-0050321/mri/t_sub-0050321_T1w_affine_reorient.mat

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UM_1/sub-0050321/mri/t_sub-0050321_T1w_rigid_reorient.mat

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UM_1/sub-0050321/mri/thalamus_sub-0050321_T1w.csv

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UM_1/sub-0050321/mri/thalamus_sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/wj_sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/wmisub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/wmsub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/wp0sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/wp1sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/wp2sub-0050321_T1w.nii.gz

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UM_1/sub-0050321/mri/wp3sub-0050321_T1w.nii.gz

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