[DATALAD RUNCMD] Compute OHSU/sub-0050164

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/OHSU/sub-0050164/anat/sub-0050164_T1w.nii.gz"
 ],
 "outputs": [
  "OHSU/sub-0050164"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

OHSU/sub-0050164/label/catROI_sub-0050164_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8m/g4/MD5E-s61234--485e035317484f59891571d6a8b2b48b.mat/MD5E-s61234--485e035317484f59891571d6a8b2b48b.mat

OHSU/sub-0050164/label/catROI_sub-0050164_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/gw/61/MD5E-s189030--b895858b16ca702cbbea41488c8954e0.xml/MD5E-s189030--b895858b16ca702cbbea41488c8954e0.xml

OHSU/sub-0050164/label/catROIs_sub-0050164_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/63/p3/MD5E-s120090--8ec8144044f95d50f07478ed3fe6f161.mat/MD5E-s120090--8ec8144044f95d50f07478ed3fe6f161.mat

OHSU/sub-0050164/label/catROIs_sub-0050164_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/xp/qQ/MD5E-s332124--3816ef70a0671b47928c48066fa6de3b.xml/MD5E-s332124--3816ef70a0671b47928c48066fa6de3b.xml

OHSU/sub-0050164/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

OHSU/sub-0050164/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pZ/p7/MD5E-s143711--796d2c0ead200b3fcfb66d1e036c6c89.nii.gz/MD5E-s143711--796d2c0ead200b3fcfb66d1e036c6c89.nii.gz

OHSU/sub-0050164/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

OHSU/sub-0050164/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kw/1P/MD5E-s162797--0d5e39facdcaf0d2e813271b81df4b1f.nii.gz/MD5E-s162797--0d5e39facdcaf0d2e813271b81df4b1f.nii.gz

OHSU/sub-0050164/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

OHSU/sub-0050164/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zx/Ww/MD5E-s217915--d74bc39c296ec34661171c81be8c2ddf.nii.gz/MD5E-s217915--d74bc39c296ec34661171c81be8c2ddf.nii.gz

OHSU/sub-0050164/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

OHSU/sub-0050164/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FQ/Z0/MD5E-s241591--8750c10bfe6ee340022cf9bfea3e9bfe.nii.gz/MD5E-s241591--8750c10bfe6ee340022cf9bfea3e9bfe.nii.gz

OHSU/sub-0050164/mri/Tian_Subcortex_S2_7T_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

OHSU/sub-0050164/mri/Tian_Subcortex_S2_7T_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2K/xM/MD5E-s19399--8084ecde7c0167f6c0e4b4d7308d58a5.nii.gz/MD5E-s19399--8084ecde7c0167f6c0e4b4d7308d58a5.nii.gz

OHSU/sub-0050164/mri/aal3_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

OHSU/sub-0050164/mri/aal3_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8z/w5/MD5E-s166261--7f716db5bb845279e4fbc17946d26df9.nii.gz/MD5E-s166261--7f716db5bb845279e4fbc17946d26df9.nii.gz

OHSU/sub-0050164/mri/anatomy3_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

OHSU/sub-0050164/mri/anatomy3_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k1/3q/MD5E-s119836--9ede863fb464bfec5a936229baac89d5.nii.gz/MD5E-s119836--9ede863fb464bfec5a936229baac89d5.nii.gz

OHSU/sub-0050164/mri/anon_misub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wQ/km/MD5E-s7231699--ac85f230d439824e06d37d89334caf70.nii.gz/MD5E-s7231699--ac85f230d439824e06d37d89334caf70.nii.gz

OHSU/sub-0050164/mri/anon_msub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X2/vw/MD5E-s8148276--8d84de46a792ea4f15f4d5af2c7e1008.nii.gz/MD5E-s8148276--8d84de46a792ea4f15f4d5af2c7e1008.nii.gz

OHSU/sub-0050164/mri/cat_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3v/Vx/MD5E-s84832--c877515d266778390f0d6eb8a1050dac.nii.gz/MD5E-s84832--c877515d266778390f0d6eb8a1050dac.nii.gz

OHSU/sub-0050164/mri/cobra_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

OHSU/sub-0050164/mri/cobra_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qX/F5/MD5E-s42392--4ff5c727275ba079e59857ae3e141f55.nii.gz/MD5E-s42392--4ff5c727275ba079e59857ae3e141f55.nii.gz

OHSU/sub-0050164/mri/hammers_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

OHSU/sub-0050164/mri/hammers_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PQ/44/MD5E-s131018--5f270674c422d7cfe6d0bcd434b31c5d.nii.gz/MD5E-s131018--5f270674c422d7cfe6d0bcd434b31c5d.nii.gz

OHSU/sub-0050164/mri/ibsr_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

OHSU/sub-0050164/mri/ibsr_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mQ/WV/MD5E-s136175--f00d614b5d67d9477ac03bfad1c34b25.nii.gz/MD5E-s136175--f00d614b5d67d9477ac03bfad1c34b25.nii.gz

OHSU/sub-0050164/mri/it_sub-0050164_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8m/Jx/MD5E-s284--d48c2f999f301b2747ea4ff335ec7284.mat/MD5E-s284--d48c2f999f301b2747ea4ff335ec7284.mat

OHSU/sub-0050164/mri/it_sub-0050164_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/KJ/fz/MD5E-s283--c84a666b46fca6005c2b385769861f65.mat/MD5E-s283--c84a666b46fca6005c2b385769861f65.mat

OHSU/sub-0050164/mri/iy_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pF/w0/MD5E-s37110092--56db1aef34efc623dd67529922656e91.nii.gz/MD5E-s37110092--56db1aef34efc623dd67529922656e91.nii.gz

OHSU/sub-0050164/mri/julichbrain_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

OHSU/sub-0050164/mri/julichbrain_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mq/kg/MD5E-s175857--ea635d83ca8ff000fde18e88b27ee05d.nii.gz/MD5E-s175857--ea635d83ca8ff000fde18e88b27ee05d.nii.gz

OHSU/sub-0050164/mri/lpba40_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

OHSU/sub-0050164/mri/lpba40_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g4/8F/MD5E-s128125--5e66111d9a76e32f75c5c475caf50412.nii.gz/MD5E-s128125--5e66111d9a76e32f75c5c475caf50412.nii.gz

OHSU/sub-0050164/mri/m0wp1sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gp/92/MD5E-s2597139--01f710394c51e927b24319ae6364d68f.nii.gz/MD5E-s2597139--01f710394c51e927b24319ae6364d68f.nii.gz

OHSU/sub-0050164/mri/m0wp2sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050164/mri/m0wp3sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V4/J1/MD5E-s2396318--ffc55618ebd25d3a3f081ce625b85a78.nii.gz/MD5E-s2396318--ffc55618ebd25d3a3f081ce625b85a78.nii.gz

OHSU/sub-0050164/mri/mori_sub-0050164_T1w.csv

@@ -0,0 +1 @@
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OHSU/sub-0050164/mri/mori_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JQ/4q/MD5E-s150567--dccffc27ae2fc39877bdf04d5a69ac8a.nii.gz/MD5E-s150567--dccffc27ae2fc39877bdf04d5a69ac8a.nii.gz

OHSU/sub-0050164/mri/mwp1sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6Q/g8/MD5E-s2607873--7badae8d8a45f52b36a8375c4688b0f8.nii.gz/MD5E-s2607873--7badae8d8a45f52b36a8375c4688b0f8.nii.gz

OHSU/sub-0050164/mri/mwp2sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kj/fX/MD5E-s2274664--c03295e2a9474430ebd35757241985e0.nii.gz/MD5E-s2274664--c03295e2a9474430ebd35757241985e0.nii.gz

OHSU/sub-0050164/mri/mwp3sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wZ/GJ/MD5E-s2395733--d8961d95f1c80279630ff33d71e49bbc.nii.gz/MD5E-s2395733--d8961d95f1c80279630ff33d71e49bbc.nii.gz

OHSU/sub-0050164/mri/neuromorphometrics_sub-0050164_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

OHSU/sub-0050164/mri/neuromorphometrics_sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050164/mri/p0sub-0050164_T1w.nii.gz

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OHSU/sub-0050164/mri/p1sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050164/mri/p2sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050164/mri/p3sub-0050164_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050164/mri/rp1sub-0050164_T1w_affine.nii.gz

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OHSU/sub-0050164/mri/rp2sub-0050164_T1w_affine.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050164/mri/rp3sub-0050164_T1w_affine.nii.gz

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OHSU/sub-0050164/mri/t_sub-0050164_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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OHSU/sub-0050164/mri/t_sub-0050164_T1w_rigid_reorient.mat

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OHSU/sub-0050164/mri/thalamus_sub-0050164_T1w.csv

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OHSU/sub-0050164/mri/thalamus_sub-0050164_T1w.nii.gz

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OHSU/sub-0050164/mri/wj_sub-0050164_T1w.nii.gz

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OHSU/sub-0050164/mri/wmisub-0050164_T1w.nii.gz

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OHSU/sub-0050164/mri/wmsub-0050164_T1w.nii.gz

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OHSU/sub-0050164/mri/wp0sub-0050164_T1w.nii.gz

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OHSU/sub-0050164/mri/wp1sub-0050164_T1w.nii.gz

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OHSU/sub-0050164/mri/wp2sub-0050164_T1w.nii.gz

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OHSU/sub-0050164/mri/wp3sub-0050164_T1w.nii.gz

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