[DATALAD RUNCMD] Compute Trinity/sub-0050239

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050239/anat/sub-0050239_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050239"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050239/label/catROI_sub-0050239_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8g/ZQ/MD5E-s61334--ee59f8880a558e6781bc694ca4b63b43.mat/MD5E-s61334--ee59f8880a558e6781bc694ca4b63b43.mat

Trinity/sub-0050239/label/catROI_sub-0050239_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/G1/qj/MD5E-s188555--0195586bca4eab90e3e4ac7341ddef3c.xml/MD5E-s188555--0195586bca4eab90e3e4ac7341ddef3c.xml

Trinity/sub-0050239/label/catROIs_sub-0050239_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z2/1J/MD5E-s119998--5bfe0f83bb0e9b005c7216cbd435c669.mat/MD5E-s119998--5bfe0f83bb0e9b005c7216cbd435c669.mat

Trinity/sub-0050239/label/catROIs_sub-0050239_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xq/kz/MD5E-s332126--2c28ba94b795f2b9528ffd54038174d0.xml/MD5E-s332126--2c28ba94b795f2b9528ffd54038174d0.xml

Trinity/sub-0050239/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050239_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0050239/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050239_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jW/6K/MD5E-s192497--b264f6830d1f4917a13c6dc1bfd0511b.nii.gz/MD5E-s192497--b264f6830d1f4917a13c6dc1bfd0511b.nii.gz

Trinity/sub-0050239/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050239_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050239/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050239_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X7/GW/MD5E-s218329--058f3b8e2a1f545ff1039d124109f628.nii.gz/MD5E-s218329--058f3b8e2a1f545ff1039d124109f628.nii.gz

Trinity/sub-0050239/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050239_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Trinity/sub-0050239/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050239_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050239/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050239_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Trinity/sub-0050239/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050239_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0v/fP/MD5E-s325773--97e8dcd4b77dc0f86acec93c8dc279ab.nii.gz/MD5E-s325773--97e8dcd4b77dc0f86acec93c8dc279ab.nii.gz

Trinity/sub-0050239/mri/Tian_Subcortex_S2_7T_sub-0050239_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Trinity/sub-0050239/mri/Tian_Subcortex_S2_7T_sub-0050239_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M8/vK/MD5E-s24498--7e22e57b7a36e850e3b06a37961f3bcd.nii.gz/MD5E-s24498--7e22e57b7a36e850e3b06a37961f3bcd.nii.gz

Trinity/sub-0050239/mri/aal3_sub-0050239_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050239/mri/aal3_sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/anatomy3_sub-0050239_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050239/mri/anatomy3_sub-0050239_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VM/M4/MD5E-s158516--6b505f78e81873782cc0cd7fe5f69126.nii.gz/MD5E-s158516--6b505f78e81873782cc0cd7fe5f69126.nii.gz

Trinity/sub-0050239/mri/anon_misub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/anon_msub-0050239_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kK/m1/MD5E-s9868062--2828c84f231c7cd0d9783a63bcfea9ae.nii.gz/MD5E-s9868062--2828c84f231c7cd0d9783a63bcfea9ae.nii.gz

Trinity/sub-0050239/mri/cat_sub-0050239_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/65/40/MD5E-s116671--d95c013995714ee58c788b2a4097cdb8.nii.gz/MD5E-s116671--d95c013995714ee58c788b2a4097cdb8.nii.gz

Trinity/sub-0050239/mri/cobra_sub-0050239_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Trinity/sub-0050239/mri/cobra_sub-0050239_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p0/8Z/MD5E-s53134--9cf21de3ddef1c559fe717a0a22302e7.nii.gz/MD5E-s53134--9cf21de3ddef1c559fe717a0a22302e7.nii.gz

Trinity/sub-0050239/mri/hammers_sub-0050239_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0050239/mri/hammers_sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/ibsr_sub-0050239_T1w.csv

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Trinity/sub-0050239/mri/ibsr_sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/it_sub-0050239_T1w_affine_reorient.mat

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Trinity/sub-0050239/mri/it_sub-0050239_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/5W/VV/MD5E-s285--9bb42256b544c0033291cef988314bb0.mat/MD5E-s285--9bb42256b544c0033291cef988314bb0.mat

Trinity/sub-0050239/mri/iy_sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/julichbrain_sub-0050239_T1w.csv

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Trinity/sub-0050239/mri/julichbrain_sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/lpba40_sub-0050239_T1w.csv

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Trinity/sub-0050239/mri/lpba40_sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/m0wp1sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/m0wp2sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/m0wp3sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/mori_sub-0050239_T1w.csv

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Trinity/sub-0050239/mri/mori_sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/mwp1sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/mwp2sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/mwp3sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/neuromorphometrics_sub-0050239_T1w.csv

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Trinity/sub-0050239/mri/neuromorphometrics_sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/p0sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/p1sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/p2sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/p3sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/rp1sub-0050239_T1w_affine.nii.gz

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Trinity/sub-0050239/mri/rp2sub-0050239_T1w_affine.nii.gz

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Trinity/sub-0050239/mri/rp3sub-0050239_T1w_affine.nii.gz

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Trinity/sub-0050239/mri/t_sub-0050239_T1w_affine_reorient.mat

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Trinity/sub-0050239/mri/t_sub-0050239_T1w_rigid_reorient.mat

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Trinity/sub-0050239/mri/thalamus_sub-0050239_T1w.csv

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Trinity/sub-0050239/mri/thalamus_sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/wj_sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/wmisub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/wp0sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/wp1sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/wp2sub-0050239_T1w.nii.gz

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Trinity/sub-0050239/mri/wp3sub-0050239_T1w.nii.gz

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