[DATALAD RUNCMD] Compute OHSU/sub-0050165

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/OHSU/sub-0050165/anat/sub-0050165_T1w.nii.gz"
 ],
 "outputs": [
  "OHSU/sub-0050165"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

OHSU/sub-0050165/label/catROI_sub-0050165_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZP/g1/MD5E-s61287--8138ec3dfdc374817c7838601ee30c87.mat/MD5E-s61287--8138ec3dfdc374817c7838601ee30c87.mat

OHSU/sub-0050165/label/catROI_sub-0050165_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9f/Gf/MD5E-s188931--364d6673505565d1336b536dfbbef808.xml/MD5E-s188931--364d6673505565d1336b536dfbbef808.xml

OHSU/sub-0050165/label/catROIs_sub-0050165_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z9/W5/MD5E-s120119--e8b047b9f0bd901a9c916d668f3feb75.mat/MD5E-s120119--e8b047b9f0bd901a9c916d668f3feb75.mat

OHSU/sub-0050165/label/catROIs_sub-0050165_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mw/JM/MD5E-s332115--d64267fb41c2148bb60a3cd8719c9ee8.xml/MD5E-s332115--d64267fb41c2148bb60a3cd8719c9ee8.xml

OHSU/sub-0050165/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

OHSU/sub-0050165/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5J/63/MD5E-s154576--49be5ebd9a1342a41950809a49a27e99.nii.gz/MD5E-s154576--49be5ebd9a1342a41950809a49a27e99.nii.gz

OHSU/sub-0050165/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

OHSU/sub-0050165/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/42/qP/MD5E-s174689--7b747eea7a567794dd2526a39160ea8a.nii.gz/MD5E-s174689--7b747eea7a567794dd2526a39160ea8a.nii.gz

OHSU/sub-0050165/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

OHSU/sub-0050165/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W5/11/MD5E-s233104--43ae80696bede62bdffc6a79971d3166.nii.gz/MD5E-s233104--43ae80696bede62bdffc6a79971d3166.nii.gz

OHSU/sub-0050165/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

OHSU/sub-0050165/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2K/Q6/MD5E-s260179--e3ec211bb7a946ccd03b971a8952c2d0.nii.gz/MD5E-s260179--e3ec211bb7a946ccd03b971a8952c2d0.nii.gz

OHSU/sub-0050165/mri/Tian_Subcortex_S2_7T_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

OHSU/sub-0050165/mri/Tian_Subcortex_S2_7T_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j1/Wg/MD5E-s20185--ec86ebdcfe8c3119c9189b8e37048b63.nii.gz/MD5E-s20185--ec86ebdcfe8c3119c9189b8e37048b63.nii.gz

OHSU/sub-0050165/mri/aal3_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

OHSU/sub-0050165/mri/aal3_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gj/87/MD5E-s177550--c7728c261a60ed0f2f321ebafc9ca028.nii.gz/MD5E-s177550--c7728c261a60ed0f2f321ebafc9ca028.nii.gz

OHSU/sub-0050165/mri/anatomy3_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

OHSU/sub-0050165/mri/anatomy3_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QZ/k3/MD5E-s128486--0784922dabe0b1e5bddf9aa9ab9089ac.nii.gz/MD5E-s128486--0784922dabe0b1e5bddf9aa9ab9089ac.nii.gz

OHSU/sub-0050165/mri/anon_misub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vZ/kf/MD5E-s7097034--294021ad39be03fbb72ae0be0992526f.nii.gz/MD5E-s7097034--294021ad39be03fbb72ae0be0992526f.nii.gz

OHSU/sub-0050165/mri/anon_msub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jm/2j/MD5E-s8268612--2d9a52eace3337d6b401fd37c5bbc8e6.nii.gz/MD5E-s8268612--2d9a52eace3337d6b401fd37c5bbc8e6.nii.gz

OHSU/sub-0050165/mri/cat_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z6/V8/MD5E-s89596--c7928638faf2696828d2b60530fce528.nii.gz/MD5E-s89596--c7928638faf2696828d2b60530fce528.nii.gz

OHSU/sub-0050165/mri/cobra_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

OHSU/sub-0050165/mri/cobra_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q3/zG/MD5E-s44070--db6f273c4b4cca0d5a42d2a34a2f40e3.nii.gz/MD5E-s44070--db6f273c4b4cca0d5a42d2a34a2f40e3.nii.gz

OHSU/sub-0050165/mri/hammers_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

OHSU/sub-0050165/mri/hammers_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/47/14/MD5E-s139371--1ebaa52ec94f12ac6d0b676999a273fe.nii.gz/MD5E-s139371--1ebaa52ec94f12ac6d0b676999a273fe.nii.gz

OHSU/sub-0050165/mri/ibsr_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

OHSU/sub-0050165/mri/ibsr_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9Q/6W/MD5E-s145149--3d51c02d6f14a4058d614730dfe701ae.nii.gz/MD5E-s145149--3d51c02d6f14a4058d614730dfe701ae.nii.gz

OHSU/sub-0050165/mri/it_sub-0050165_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wg/98/MD5E-s284--df60cb0eb0a7326a02edf2a9ee808c81.mat/MD5E-s284--df60cb0eb0a7326a02edf2a9ee808c81.mat

OHSU/sub-0050165/mri/it_sub-0050165_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vV/ZZ/MD5E-s283--81eb3e9361eb294b2f5c34f8d7473435.mat/MD5E-s283--81eb3e9361eb294b2f5c34f8d7473435.mat

OHSU/sub-0050165/mri/iy_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M3/p4/MD5E-s38903766--5d2d5b5dbfb0083373965adb8775f7d2.nii.gz/MD5E-s38903766--5d2d5b5dbfb0083373965adb8775f7d2.nii.gz

OHSU/sub-0050165/mri/julichbrain_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

OHSU/sub-0050165/mri/julichbrain_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4w/82/MD5E-s186784--7871ce30585d42d9cc80c313a5516f62.nii.gz/MD5E-s186784--7871ce30585d42d9cc80c313a5516f62.nii.gz

OHSU/sub-0050165/mri/lpba40_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

OHSU/sub-0050165/mri/lpba40_sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050165/mri/m0wp1sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7w/J9/MD5E-s2592438--2d0a847fb7f2a990e1adb381d6a8cff0.nii.gz/MD5E-s2592438--2d0a847fb7f2a990e1adb381d6a8cff0.nii.gz

OHSU/sub-0050165/mri/m0wp2sub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/m0wp3sub-0050165_T1w.nii.gz

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+../../../.git/annex/objects/4X/q6/MD5E-s2436409--7aa08b9ea43357b1f9b22977982259ee.nii.gz/MD5E-s2436409--7aa08b9ea43357b1f9b22977982259ee.nii.gz

OHSU/sub-0050165/mri/mori_sub-0050165_T1w.csv

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OHSU/sub-0050165/mri/mori_sub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/mwp1sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050165/mri/mwp2sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VJ/wv/MD5E-s2284415--2ed84e8d1c578133dff5d7ca5ea28fb3.nii.gz/MD5E-s2284415--2ed84e8d1c578133dff5d7ca5ea28fb3.nii.gz

OHSU/sub-0050165/mri/mwp3sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050165/mri/neuromorphometrics_sub-0050165_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

OHSU/sub-0050165/mri/neuromorphometrics_sub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/p0sub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/p1sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050165/mri/p2sub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/p3sub-0050165_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050165/mri/rp1sub-0050165_T1w_affine.nii.gz

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OHSU/sub-0050165/mri/rp2sub-0050165_T1w_affine.nii.gz

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+../../../.git/annex/objects/jK/vP/MD5E-s311260--f79dcfb5b84d9622b3aef920646902b7.nii.gz/MD5E-s311260--f79dcfb5b84d9622b3aef920646902b7.nii.gz

OHSU/sub-0050165/mri/rp3sub-0050165_T1w_affine.nii.gz

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OHSU/sub-0050165/mri/t_sub-0050165_T1w_affine_reorient.mat

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OHSU/sub-0050165/mri/t_sub-0050165_T1w_rigid_reorient.mat

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OHSU/sub-0050165/mri/thalamus_sub-0050165_T1w.csv

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OHSU/sub-0050165/mri/thalamus_sub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/wj_sub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/wmisub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/wmsub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/wp0sub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/wp1sub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/wp2sub-0050165_T1w.nii.gz

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OHSU/sub-0050165/mri/wp3sub-0050165_T1w.nii.gz

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