[DATALAD RUNCMD] Compute Yale/sub-0050575

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050575/anat/sub-0050575_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050575"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050575/label/catROI_sub-0050575_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/FM/jv/MD5E-s57945--fb5c8973e6af408bf5861ffce5a4258e.mat/MD5E-s57945--fb5c8973e6af408bf5861ffce5a4258e.mat

Yale/sub-0050575/label/catROI_sub-0050575_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/qf/vv/MD5E-s188807--329a7e7d2c1f3d872c71927149eeeb06.xml/MD5E-s188807--329a7e7d2c1f3d872c71927149eeeb06.xml

Yale/sub-0050575/label/catROIs_sub-0050575_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/FW/0P/MD5E-s120100--79e9d8200fdfb821268c214ebdd59e81.mat/MD5E-s120100--79e9d8200fdfb821268c214ebdd59e81.mat

Yale/sub-0050575/label/catROIs_sub-0050575_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0F/86/MD5E-s332140--291ac20b3e5b74021b518d9352851014.xml/MD5E-s332140--291ac20b3e5b74021b518d9352851014.xml

Yale/sub-0050575/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050575_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050575/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050575_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j2/mz/MD5E-s181344--dfdb3f017bffe9f476fe94e966fd3abc.nii.gz/MD5E-s181344--dfdb3f017bffe9f476fe94e966fd3abc.nii.gz

Yale/sub-0050575/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050575_T1w.csv

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Yale/sub-0050575/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050575_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050575/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050575_T1w.csv

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+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050575/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050575_T1w.nii.gz

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+../../../.git/annex/objects/G8/zz/MD5E-s303648--7bc16bd7f8408554581cba38460a2625.nii.gz/MD5E-s303648--7bc16bd7f8408554581cba38460a2625.nii.gz

Yale/sub-0050575/mri/Tian_Subcortex_S2_7T_sub-0050575_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050575/mri/Tian_Subcortex_S2_7T_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/aal3_sub-0050575_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050575/mri/aal3_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/anatomy3_sub-0050575_T1w.csv

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Yale/sub-0050575/mri/anatomy3_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/anon_misub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/anon_msub-0050575_T1w.nii.gz

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+../../../.git/annex/objects/2w/94/MD5E-s11614967--38e887ff53e85b5c5f5127c678c7db21.nii.gz/MD5E-s11614967--38e887ff53e85b5c5f5127c678c7db21.nii.gz

Yale/sub-0050575/mri/cat_sub-0050575_T1w.nii.gz

@@ -0,0 +1 @@
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Yale/sub-0050575/mri/cobra_sub-0050575_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050575/mri/cobra_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/hammers_sub-0050575_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050575/mri/hammers_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/ibsr_sub-0050575_T1w.csv

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Yale/sub-0050575/mri/ibsr_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/it_sub-0050575_T1w_affine_reorient.mat

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Yale/sub-0050575/mri/it_sub-0050575_T1w_rigid_reorient.mat

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Yale/sub-0050575/mri/iy_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/julichbrain_sub-0050575_T1w.csv

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Yale/sub-0050575/mri/julichbrain_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/lpba40_sub-0050575_T1w.csv

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Yale/sub-0050575/mri/lpba40_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/m0wp1sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/m0wp2sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/m0wp3sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/mori_sub-0050575_T1w.csv

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Yale/sub-0050575/mri/mori_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/mwp1sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/mwp2sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/mwp3sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/neuromorphometrics_sub-0050575_T1w.csv

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Yale/sub-0050575/mri/neuromorphometrics_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/p0sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/p1sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/p2sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/p3sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/rp1sub-0050575_T1w_affine.nii.gz

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Yale/sub-0050575/mri/rp2sub-0050575_T1w_affine.nii.gz

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Yale/sub-0050575/mri/rp3sub-0050575_T1w_affine.nii.gz

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Yale/sub-0050575/mri/t_sub-0050575_T1w_affine_reorient.mat

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Yale/sub-0050575/mri/t_sub-0050575_T1w_rigid_reorient.mat

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Yale/sub-0050575/mri/thalamus_sub-0050575_T1w.csv

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Yale/sub-0050575/mri/thalamus_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/wj_sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/wmisub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/wmsub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/wp0sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/wp1sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/wp2sub-0050575_T1w.nii.gz

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Yale/sub-0050575/mri/wp3sub-0050575_T1w.nii.gz

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