[DATALAD RUNCMD] Compute USM/sub-0050481

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050481/anat/sub-0050481_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050481"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050481/label/catROI_sub-0050481_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/QJ/k4/MD5E-s61411--1c3ce4945a374ad2dfbfcd3e5de12db7.mat/MD5E-s61411--1c3ce4945a374ad2dfbfcd3e5de12db7.mat

USM/sub-0050481/label/catROI_sub-0050481_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/k4/25/MD5E-s189160--e07830e9834a958e86e6ed766cf881e6.xml/MD5E-s189160--e07830e9834a958e86e6ed766cf881e6.xml

USM/sub-0050481/label/catROIs_sub-0050481_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mM/vj/MD5E-s120118--79569e148d1396fa4671e3bd2ea41236.mat/MD5E-s120118--79569e148d1396fa4671e3bd2ea41236.mat

USM/sub-0050481/label/catROIs_sub-0050481_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mX/P3/MD5E-s332119--1c76c8bc583f0b3b489f33782f39c15a.xml/MD5E-s332119--1c76c8bc583f0b3b489f33782f39c15a.xml

USM/sub-0050481/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050481/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vq/mm/MD5E-s456844--d23d8b13010d07a95f75ee74bf039d7b.nii.gz/MD5E-s456844--d23d8b13010d07a95f75ee74bf039d7b.nii.gz

USM/sub-0050481/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050481/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g8/5z/MD5E-s511534--2418ee48a1bde52867d51108ee1b89ae.nii.gz/MD5E-s511534--2418ee48a1bde52867d51108ee1b89ae.nii.gz

USM/sub-0050481/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050481/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zM/7W/MD5E-s721733--cae9242edca8b23c6b3465b03e89f222.nii.gz/MD5E-s721733--cae9242edca8b23c6b3465b03e89f222.nii.gz

USM/sub-0050481/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050481/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k7/2g/MD5E-s795147--fa64f50b9d722106828c11caa285f4ef.nii.gz/MD5E-s795147--fa64f50b9d722106828c11caa285f4ef.nii.gz

USM/sub-0050481/mri/Tian_Subcortex_S2_7T_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050481/mri/Tian_Subcortex_S2_7T_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/37/MD5E-s73965--d948df6619be67d55b78d07c86dfcade.nii.gz/MD5E-s73965--d948df6619be67d55b78d07c86dfcade.nii.gz

USM/sub-0050481/mri/aal3_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050481/mri/aal3_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x2/W0/MD5E-s517581--a5020b702de8e4692674411ee32b1ee6.nii.gz/MD5E-s517581--a5020b702de8e4692674411ee32b1ee6.nii.gz

USM/sub-0050481/mri/anatomy3_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050481/mri/anatomy3_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K4/qm/MD5E-s377582--5339ed9e3b48551b48182f8762231405.nii.gz/MD5E-s377582--5339ed9e3b48551b48182f8762231405.nii.gz

USM/sub-0050481/mri/anon_misub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gj/Vf/MD5E-s18999902--db11849c6e0bb033c2566f61cf21690d.nii.gz/MD5E-s18999902--db11849c6e0bb033c2566f61cf21690d.nii.gz

USM/sub-0050481/mri/anon_msub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5W/z0/MD5E-s33043285--ee8f46f44ad50498e08a9c2ab3d8b990.nii.gz/MD5E-s33043285--ee8f46f44ad50498e08a9c2ab3d8b990.nii.gz

USM/sub-0050481/mri/cat_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/P3/MD5E-s229203--b2ebdc6786e1e1aef3d650177385c429.nii.gz/MD5E-s229203--b2ebdc6786e1e1aef3d650177385c429.nii.gz

USM/sub-0050481/mri/cobra_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050481/mri/cobra_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gq/f1/MD5E-s140051--dd1a9f3d3f42872d683c4e3bbedf3d52.nii.gz/MD5E-s140051--dd1a9f3d3f42872d683c4e3bbedf3d52.nii.gz

USM/sub-0050481/mri/hammers_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050481/mri/hammers_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/49/1X/MD5E-s401769--e375b2772e4e4365f39463d2af8a8ae2.nii.gz/MD5E-s401769--e375b2772e4e4365f39463d2af8a8ae2.nii.gz

USM/sub-0050481/mri/ibsr_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050481/mri/ibsr_sub-0050481_T1w.nii.gz

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+../../../.git/annex/objects/5v/XQ/MD5E-s435778--77178c7612150b8baf5fb12172f09a9d.nii.gz/MD5E-s435778--77178c7612150b8baf5fb12172f09a9d.nii.gz

USM/sub-0050481/mri/it_sub-0050481_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/x6/k7/MD5E-s284--f9a22823819f0222ba546f9dad67c55f.mat/MD5E-s284--f9a22823819f0222ba546f9dad67c55f.mat

USM/sub-0050481/mri/it_sub-0050481_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q5/x7/MD5E-s284--a8a5012bc77add4902e89c59c08fc76d.mat/MD5E-s284--a8a5012bc77add4902e89c59c08fc76d.mat

USM/sub-0050481/mri/iy_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vf/q4/MD5E-s154881615--1b50e14c31d916f59a66d50d4757b5ec.nii.gz/MD5E-s154881615--1b50e14c31d916f59a66d50d4757b5ec.nii.gz

USM/sub-0050481/mri/julichbrain_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050481/mri/julichbrain_sub-0050481_T1w.nii.gz

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+../../../.git/annex/objects/g1/0Q/MD5E-s543343--84a6daf446187b24e1936bd91506a068.nii.gz/MD5E-s543343--84a6daf446187b24e1936bd91506a068.nii.gz

USM/sub-0050481/mri/lpba40_sub-0050481_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050481/mri/lpba40_sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kj/4J/MD5E-s397904--be5df3e8710c196979f6bc58865227f3.nii.gz/MD5E-s397904--be5df3e8710c196979f6bc58865227f3.nii.gz

USM/sub-0050481/mri/m0wp1sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050481/mri/m0wp2sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/m0wp3sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/mori_sub-0050481_T1w.csv

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USM/sub-0050481/mri/mori_sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/mwp1sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050481/mri/mwp2sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/mwp3sub-0050481_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050481/mri/neuromorphometrics_sub-0050481_T1w.csv

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USM/sub-0050481/mri/neuromorphometrics_sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/p0sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/p1sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/p2sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/p3sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/rp1sub-0050481_T1w_affine.nii.gz

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USM/sub-0050481/mri/rp2sub-0050481_T1w_affine.nii.gz

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USM/sub-0050481/mri/rp3sub-0050481_T1w_affine.nii.gz

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USM/sub-0050481/mri/t_sub-0050481_T1w_affine_reorient.mat

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USM/sub-0050481/mri/t_sub-0050481_T1w_rigid_reorient.mat

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USM/sub-0050481/mri/thalamus_sub-0050481_T1w.csv

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USM/sub-0050481/mri/thalamus_sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/wj_sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/wmisub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/wmsub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/wp0sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/wp1sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/wp2sub-0050481_T1w.nii.gz

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USM/sub-0050481/mri/wp3sub-0050481_T1w.nii.gz

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