[DATALAD RUNCMD] Compute USM/sub-0050493

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050493/anat/sub-0050493_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050493"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050493/label/catROI_sub-0050493_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vG/59/MD5E-s61425--ac4329ba5c8796f8052fc120b649345f.mat/MD5E-s61425--ac4329ba5c8796f8052fc120b649345f.mat

USM/sub-0050493/label/catROI_sub-0050493_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/zg/w7/MD5E-s189026--877a48c12354cda5e614fa9556c07e9a.xml/MD5E-s189026--877a48c12354cda5e614fa9556c07e9a.xml

USM/sub-0050493/label/catROIs_sub-0050493_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kQ/kK/MD5E-s120145--f4772a304cf3c114a656b3b0b4202f13.mat/MD5E-s120145--f4772a304cf3c114a656b3b0b4202f13.mat

USM/sub-0050493/label/catROIs_sub-0050493_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/xf/6p/MD5E-s332071--40f91a5ce27816549fd6a40855f98613.xml/MD5E-s332071--40f91a5ce27816549fd6a40855f98613.xml

USM/sub-0050493/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050493/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q9/29/MD5E-s414431--eea36338b62053e3dfcd2f1408532a79.nii.gz/MD5E-s414431--eea36338b62053e3dfcd2f1408532a79.nii.gz

USM/sub-0050493/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050493/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M6/53/MD5E-s459580--91574b6221094394a9f1ab14276aad42.nii.gz/MD5E-s459580--91574b6221094394a9f1ab14276aad42.nii.gz

USM/sub-0050493/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050493/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WQ/97/MD5E-s660021--875a18c3ba920043e57b6251836a44f0.nii.gz/MD5E-s660021--875a18c3ba920043e57b6251836a44f0.nii.gz

USM/sub-0050493/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050493/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VZ/jX/MD5E-s724520--703d53bc0a726d10685193746411e6f8.nii.gz/MD5E-s724520--703d53bc0a726d10685193746411e6f8.nii.gz

USM/sub-0050493/mri/Tian_Subcortex_S2_7T_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050493/mri/Tian_Subcortex_S2_7T_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/10/4M/MD5E-s71434--6bc2a53d9e025ff5b7658470f7d6c78c.nii.gz/MD5E-s71434--6bc2a53d9e025ff5b7658470f7d6c78c.nii.gz

USM/sub-0050493/mri/aal3_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050493/mri/aal3_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z7/70/MD5E-s465948--0bfb9d47a594e6adbf2c560281bacb02.nii.gz/MD5E-s465948--0bfb9d47a594e6adbf2c560281bacb02.nii.gz

USM/sub-0050493/mri/anatomy3_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050493/mri/anatomy3_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3F/Q4/MD5E-s346412--45b23e71525f881a32c022e6abc2ff25.nii.gz/MD5E-s346412--45b23e71525f881a32c022e6abc2ff25.nii.gz

USM/sub-0050493/mri/anon_misub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VF/fw/MD5E-s21647852--d62aff8b7ed64b480e7bc0ac8e8a66b9.nii.gz/MD5E-s21647852--d62aff8b7ed64b480e7bc0ac8e8a66b9.nii.gz

USM/sub-0050493/mri/anon_msub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M5/8z/MD5E-s34548148--c5ce56bc2a24268888558a802ee6ee51.nii.gz/MD5E-s34548148--c5ce56bc2a24268888558a802ee6ee51.nii.gz

USM/sub-0050493/mri/cat_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0q/3g/MD5E-s265641--67f37754a30e1474605739e6e1f9fdfb.nii.gz/MD5E-s265641--67f37754a30e1474605739e6e1f9fdfb.nii.gz

USM/sub-0050493/mri/cobra_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050493/mri/cobra_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fk/Fz/MD5E-s132215--6da3b465523e4e3c914759469c9d92f6.nii.gz/MD5E-s132215--6da3b465523e4e3c914759469c9d92f6.nii.gz

USM/sub-0050493/mri/hammers_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050493/mri/hammers_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4p/09/MD5E-s372259--17ba73b03878c8d225f7b08e4e712cd5.nii.gz/MD5E-s372259--17ba73b03878c8d225f7b08e4e712cd5.nii.gz

USM/sub-0050493/mri/ibsr_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050493/mri/ibsr_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7V/v7/MD5E-s398989--77040cdda63b403eeaf4bbe259819d07.nii.gz/MD5E-s398989--77040cdda63b403eeaf4bbe259819d07.nii.gz

USM/sub-0050493/mri/it_sub-0050493_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mp/x0/MD5E-s284--a483625e56b72b037b0f20378328d679.mat/MD5E-s284--a483625e56b72b037b0f20378328d679.mat

USM/sub-0050493/mri/it_sub-0050493_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kq/pX/MD5E-s285--4780e1dad15ef1c2985c0e1242db74cf.mat/MD5E-s285--4780e1dad15ef1c2985c0e1242db74cf.mat

USM/sub-0050493/mri/iy_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P2/3v/MD5E-s169703544--13d0a821229c37ab377460e849b65cf3.nii.gz/MD5E-s169703544--13d0a821229c37ab377460e849b65cf3.nii.gz

USM/sub-0050493/mri/julichbrain_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050493/mri/julichbrain_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M0/GP/MD5E-s493245--79a279126afcaf3d11bd58c1d80b7c46.nii.gz/MD5E-s493245--79a279126afcaf3d11bd58c1d80b7c46.nii.gz

USM/sub-0050493/mri/lpba40_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050493/mri/lpba40_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3J/X5/MD5E-s367032--4c8ae2c008d1d75d9c5836d426ce3786.nii.gz/MD5E-s367032--4c8ae2c008d1d75d9c5836d426ce3786.nii.gz

USM/sub-0050493/mri/m0wp1sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q0/x5/MD5E-s2547365--deb1c125cfaa5944761ba64fa0fa60a8.nii.gz/MD5E-s2547365--deb1c125cfaa5944761ba64fa0fa60a8.nii.gz

USM/sub-0050493/mri/m0wp2sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XP/Kf/MD5E-s2270676--ef0b9db602306f0bf45f4daa1eb34300.nii.gz/MD5E-s2270676--ef0b9db602306f0bf45f4daa1eb34300.nii.gz

USM/sub-0050493/mri/m0wp3sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2G/Zv/MD5E-s2455519--da55223dd760c5bd5e724f24a866cc42.nii.gz/MD5E-s2455519--da55223dd760c5bd5e724f24a866cc42.nii.gz

USM/sub-0050493/mri/mori_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050493/mri/mori_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050493/mri/mwp1sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fm/ZK/MD5E-s2549176--b4b7ae430bc74b7563a6d977d24ea026.nii.gz/MD5E-s2549176--b4b7ae430bc74b7563a6d977d24ea026.nii.gz

USM/sub-0050493/mri/mwp2sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050493/mri/mwp3sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/03/73/MD5E-s2455549--c588efd44f88eb2c8dd2a107f24dfb2a.nii.gz/MD5E-s2455549--c588efd44f88eb2c8dd2a107f24dfb2a.nii.gz

USM/sub-0050493/mri/neuromorphometrics_sub-0050493_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

USM/sub-0050493/mri/neuromorphometrics_sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qZ/mV/MD5E-s500611--b4eea8fbe602449a81b58089fcdc8681.nii.gz/MD5E-s500611--b4eea8fbe602449a81b58089fcdc8681.nii.gz

USM/sub-0050493/mri/p0sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jz/x6/MD5E-s3792899--b22e3cddb3e4d248475cb68980b2b3b9.nii.gz/MD5E-s3792899--b22e3cddb3e4d248475cb68980b2b3b9.nii.gz

USM/sub-0050493/mri/p1sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vv/JX/MD5E-s3726823--9397c2f65916e73609152c3632efa379.nii.gz/MD5E-s3726823--9397c2f65916e73609152c3632efa379.nii.gz

USM/sub-0050493/mri/p2sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1F/61/MD5E-s2576136--a87278a41735b216cac9706f5438e5fe.nii.gz/MD5E-s2576136--a87278a41735b216cac9706f5438e5fe.nii.gz

USM/sub-0050493/mri/p3sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050493/mri/rp1sub-0050493_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050493/mri/rp2sub-0050493_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1M/9f/MD5E-s270198--f0bec0c55777b4c9be76074d2214be60.nii.gz/MD5E-s270198--f0bec0c55777b4c9be76074d2214be60.nii.gz

USM/sub-0050493/mri/rp3sub-0050493_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P2/f6/MD5E-s249643--fc5b8d40eaaeae9e1ebaf5716dbe4b0c.nii.gz/MD5E-s249643--fc5b8d40eaaeae9e1ebaf5716dbe4b0c.nii.gz

USM/sub-0050493/mri/t_sub-0050493_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wm/Ff/MD5E-s284--c9e0bdd8c93e3e874f6ae12ff306a5e7.mat/MD5E-s284--c9e0bdd8c93e3e874f6ae12ff306a5e7.mat

USM/sub-0050493/mri/t_sub-0050493_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/78/gx/MD5E-s285--ec2773eac048bfcfc755635de818b7d4.mat/MD5E-s285--ec2773eac048bfcfc755635de818b7d4.mat

USM/sub-0050493/mri/thalamus_sub-0050493_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050493/mri/thalamus_sub-0050493_T1w.nii.gz

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USM/sub-0050493/mri/wj_sub-0050493_T1w.nii.gz

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USM/sub-0050493/mri/wmisub-0050493_T1w.nii.gz

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USM/sub-0050493/mri/wmsub-0050493_T1w.nii.gz

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USM/sub-0050493/mri/wp0sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050493/mri/wp1sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050493/mri/wp2sub-0050493_T1w.nii.gz

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USM/sub-0050493/mri/wp3sub-0050493_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050493/mri/y_sub-0050493_T1w.nii.gz

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