[DATALAD RUNCMD] Compute Yale/sub-0050551

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050551/anat/sub-0050551_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050551"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050551/label/catROI_sub-0050551_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/x7/Kk/MD5E-s57813--8ee154c9845d83030ce9cbc1c5f8ec8e.mat/MD5E-s57813--8ee154c9845d83030ce9cbc1c5f8ec8e.mat

Yale/sub-0050551/label/catROI_sub-0050551_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fw/4v/MD5E-s188657--4e6ce901e21e6f2c25a723e947df49e8.xml/MD5E-s188657--4e6ce901e21e6f2c25a723e947df49e8.xml

Yale/sub-0050551/label/catROIs_sub-0050551_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XK/Mf/MD5E-s120104--405201a9372470144089b638b1772af3.mat/MD5E-s120104--405201a9372470144089b638b1772af3.mat

Yale/sub-0050551/label/catROIs_sub-0050551_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1X/31/MD5E-s332118--c2f7233f9324d23291a53b78949afdfc.xml/MD5E-s332118--c2f7233f9324d23291a53b78949afdfc.xml

Yale/sub-0050551/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050551/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8g/X0/MD5E-s171888--0209a61f62ccae292186c584de0fb4e2.nii.gz/MD5E-s171888--0209a61f62ccae292186c584de0fb4e2.nii.gz

Yale/sub-0050551/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050551/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jJ/1x/MD5E-s191461--390f1ce9b21442d1990a1831417bd65f.nii.gz/MD5E-s191461--390f1ce9b21442d1990a1831417bd65f.nii.gz

Yale/sub-0050551/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050551/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x2/51/MD5E-s260494--0df3fe9a8a8c6ae18a03061d8d0a82bd.nii.gz/MD5E-s260494--0df3fe9a8a8c6ae18a03061d8d0a82bd.nii.gz

Yale/sub-0050551/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050551/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WZ/Vw/MD5E-s289344--1c4f2f508a36960b17dc0a8d3a121dc7.nii.gz/MD5E-s289344--1c4f2f508a36960b17dc0a8d3a121dc7.nii.gz

Yale/sub-0050551/mri/Tian_Subcortex_S2_7T_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050551/mri/Tian_Subcortex_S2_7T_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GW/pf/MD5E-s23386--4f4920a48910226fca27d36256e8ff05.nii.gz/MD5E-s23386--4f4920a48910226fca27d36256e8ff05.nii.gz

Yale/sub-0050551/mri/aal3_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Yale/sub-0050551/mri/aal3_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9k/WF/MD5E-s191430--00fb24ed32cec7773755d4de7253e433.nii.gz/MD5E-s191430--00fb24ed32cec7773755d4de7253e433.nii.gz

Yale/sub-0050551/mri/anatomy3_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Yale/sub-0050551/mri/anatomy3_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WF/6w/MD5E-s138879--8efb2c19bbcc33449cd2eeb8f41cad19.nii.gz/MD5E-s138879--8efb2c19bbcc33449cd2eeb8f41cad19.nii.gz

Yale/sub-0050551/mri/anon_misub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9V/fG/MD5E-s4912946--08e72b3771e32d3993e847116b297a83.nii.gz/MD5E-s4912946--08e72b3771e32d3993e847116b297a83.nii.gz

Yale/sub-0050551/mri/anon_msub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F3/Z0/MD5E-s11177760--5f6fd3515c83a9bd842404f7c96137ab.nii.gz/MD5E-s11177760--5f6fd3515c83a9bd842404f7c96137ab.nii.gz

Yale/sub-0050551/mri/cat_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x3/vk/MD5E-s96230--149b3447321ad01a6bae20d77b8d9052.nii.gz/MD5E-s96230--149b3447321ad01a6bae20d77b8d9052.nii.gz

Yale/sub-0050551/mri/cobra_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050551/mri/cobra_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vq/4G/MD5E-s48019--a4401b3b5dc9324d540bf323db04d2af.nii.gz/MD5E-s48019--a4401b3b5dc9324d540bf323db04d2af.nii.gz

Yale/sub-0050551/mri/hammers_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050551/mri/hammers_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/28/MG/MD5E-s148257--2d8ca3b89339fe23cbf2e44243585a64.nii.gz/MD5E-s148257--2d8ca3b89339fe23cbf2e44243585a64.nii.gz

Yale/sub-0050551/mri/ibsr_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Yale/sub-0050551/mri/ibsr_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FF/Jg/MD5E-s158171--9ff20200ff3dbfd2f7100f9e453573b0.nii.gz/MD5E-s158171--9ff20200ff3dbfd2f7100f9e453573b0.nii.gz

Yale/sub-0050551/mri/it_sub-0050551_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/P4/5z/MD5E-s284--a82706f5701092a021a7296f5838853d.mat/MD5E-s284--a82706f5701092a021a7296f5838853d.mat

Yale/sub-0050551/mri/it_sub-0050551_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/q3/Xj/MD5E-s283--f98e40456d8a8cdcbe02d5b03ebb7255.mat/MD5E-s283--f98e40456d8a8cdcbe02d5b03ebb7255.mat

Yale/sub-0050551/mri/iy_sub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/julichbrain_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Yale/sub-0050551/mri/julichbrain_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p8/2v/MD5E-s205248--7106801db30e014191a91223a292cb9a.nii.gz/MD5E-s205248--7106801db30e014191a91223a292cb9a.nii.gz

Yale/sub-0050551/mri/lpba40_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Yale/sub-0050551/mri/lpba40_sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X0/2P/MD5E-s146400--8e25d9993658e892b06495cc06f3d915.nii.gz/MD5E-s146400--8e25d9993658e892b06495cc06f3d915.nii.gz

Yale/sub-0050551/mri/m0wp1sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pj/JP/MD5E-s2604093--168787c9037a378991f9378489c45f36.nii.gz/MD5E-s2604093--168787c9037a378991f9378489c45f36.nii.gz

Yale/sub-0050551/mri/m0wp2sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FZ/vQ/MD5E-s2291177--a2453b6241addcc3773371640847c5da.nii.gz/MD5E-s2291177--a2453b6241addcc3773371640847c5da.nii.gz

Yale/sub-0050551/mri/m0wp3sub-0050551_T1w.nii.gz

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+../../../.git/annex/objects/xV/4f/MD5E-s2490165--3f0e7d795e6e28a4438ddc2a7034a229.nii.gz/MD5E-s2490165--3f0e7d795e6e28a4438ddc2a7034a229.nii.gz

Yale/sub-0050551/mri/mori_sub-0050551_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

Yale/sub-0050551/mri/mori_sub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/mwp1sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kj/fw/MD5E-s2605439--63eb9f9f3da8b27a7289b092d4c983fa.nii.gz/MD5E-s2605439--63eb9f9f3da8b27a7289b092d4c983fa.nii.gz

Yale/sub-0050551/mri/mwp2sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
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Yale/sub-0050551/mri/mwp3sub-0050551_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W1/MF/MD5E-s2486763--92c06f59d1181620371cb308356a043f.nii.gz/MD5E-s2486763--92c06f59d1181620371cb308356a043f.nii.gz

Yale/sub-0050551/mri/neuromorphometrics_sub-0050551_T1w.csv

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Yale/sub-0050551/mri/neuromorphometrics_sub-0050551_T1w.nii.gz

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+../../../.git/annex/objects/ww/W9/MD5E-s206809--54cbb9a24471eb76849b4202fff4ddcc.nii.gz/MD5E-s206809--54cbb9a24471eb76849b4202fff4ddcc.nii.gz

Yale/sub-0050551/mri/p0sub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/p1sub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/p2sub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/p3sub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/rp1sub-0050551_T1w_affine.nii.gz

@@ -0,0 +1 @@
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Yale/sub-0050551/mri/rp2sub-0050551_T1w_affine.nii.gz

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Yale/sub-0050551/mri/rp3sub-0050551_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pw/gM/MD5E-s271614--54df10c1a5840eb65669168c8b490547.nii.gz/MD5E-s271614--54df10c1a5840eb65669168c8b490547.nii.gz

Yale/sub-0050551/mri/t_sub-0050551_T1w_affine_reorient.mat

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Yale/sub-0050551/mri/t_sub-0050551_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/QV/9g/MD5E-s284--b5e0c7ec5ecc611d94532a8b492caa3d.mat/MD5E-s284--b5e0c7ec5ecc611d94532a8b492caa3d.mat

Yale/sub-0050551/mri/thalamus_sub-0050551_T1w.csv

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Yale/sub-0050551/mri/thalamus_sub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/wj_sub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/wmisub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/wmsub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/wp0sub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/wp1sub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/wp2sub-0050551_T1w.nii.gz

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Yale/sub-0050551/mri/wp3sub-0050551_T1w.nii.gz

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