[DATALAD RUNCMD] Compute Yale/sub-0050564

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050564/anat/sub-0050564_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050564"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050564/label/catROI_sub-0050564_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/JW/9k/MD5E-s57697--fe0fa590018f9f0ae74911ba68bd2bd4.mat/MD5E-s57697--fe0fa590018f9f0ae74911ba68bd2bd4.mat

Yale/sub-0050564/label/catROI_sub-0050564_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/5X/84/MD5E-s188975--d3618e42f55aee0dd666d907daa1b8c5.xml/MD5E-s188975--d3618e42f55aee0dd666d907daa1b8c5.xml

Yale/sub-0050564/label/catROIs_sub-0050564_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vk/f8/MD5E-s120211--2df8bf591b086d4c9171a31d3bf044a0.mat/MD5E-s120211--2df8bf591b086d4c9171a31d3bf044a0.mat

Yale/sub-0050564/label/catROIs_sub-0050564_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/MG/Qf/MD5E-s332089--2cbabb8d41121fb8a6b2efaa7ff1b6ca.xml/MD5E-s332089--2cbabb8d41121fb8a6b2efaa7ff1b6ca.xml

Yale/sub-0050564/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050564_T1w.csv

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+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050564/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050564_T1w.nii.gz

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+../../../.git/annex/objects/V6/WQ/MD5E-s157100--cc2def9626593eaaffcc813cb1fd3221.nii.gz/MD5E-s157100--cc2def9626593eaaffcc813cb1fd3221.nii.gz

Yale/sub-0050564/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050564_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050564/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050564_T1w.nii.gz

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+../../../.git/annex/objects/kX/j3/MD5E-s177177--dc57782b215f435e21fecdf9572b1256.nii.gz/MD5E-s177177--dc57782b215f435e21fecdf9572b1256.nii.gz

Yale/sub-0050564/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050564_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050564/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050564_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xj/6Z/MD5E-s237405--561e17bc9775c946619e97a0353617b4.nii.gz/MD5E-s237405--561e17bc9775c946619e97a0353617b4.nii.gz

Yale/sub-0050564/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050564_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050564/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050564_T1w.nii.gz

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+../../../.git/annex/objects/GQ/k9/MD5E-s264998--48c4cf938ab9d9cdb5d3633e0bf20774.nii.gz/MD5E-s264998--48c4cf938ab9d9cdb5d3633e0bf20774.nii.gz

Yale/sub-0050564/mri/Tian_Subcortex_S2_7T_sub-0050564_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050564/mri/Tian_Subcortex_S2_7T_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/aal3_sub-0050564_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050564/mri/aal3_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/anatomy3_sub-0050564_T1w.csv

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Yale/sub-0050564/mri/anatomy3_sub-0050564_T1w.nii.gz

@@ -0,0 +1 @@
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Yale/sub-0050564/mri/anon_misub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/anon_msub-0050564_T1w.nii.gz

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+../../../.git/annex/objects/Gf/JK/MD5E-s10766483--b88b39fb28cbe94c19e17a7fd1dc9a45.nii.gz/MD5E-s10766483--b88b39fb28cbe94c19e17a7fd1dc9a45.nii.gz

Yale/sub-0050564/mri/cat_sub-0050564_T1w.nii.gz

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+../../../.git/annex/objects/WP/GK/MD5E-s92588--9c235be4edfbb9472ebf5aa4239cdecc.nii.gz/MD5E-s92588--9c235be4edfbb9472ebf5aa4239cdecc.nii.gz

Yale/sub-0050564/mri/cobra_sub-0050564_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050564/mri/cobra_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/hammers_sub-0050564_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050564/mri/hammers_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/ibsr_sub-0050564_T1w.csv

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Yale/sub-0050564/mri/ibsr_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/it_sub-0050564_T1w_affine_reorient.mat

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Yale/sub-0050564/mri/it_sub-0050564_T1w_rigid_reorient.mat

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Yale/sub-0050564/mri/iy_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/julichbrain_sub-0050564_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Yale/sub-0050564/mri/julichbrain_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/lpba40_sub-0050564_T1w.csv

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Yale/sub-0050564/mri/lpba40_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/m0wp1sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/m0wp2sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/m0wp3sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/mori_sub-0050564_T1w.csv

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Yale/sub-0050564/mri/mori_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/mwp1sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/mwp2sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/mwp3sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/neuromorphometrics_sub-0050564_T1w.csv

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Yale/sub-0050564/mri/neuromorphometrics_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/p0sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/p1sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/p2sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/p3sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/rp1sub-0050564_T1w_affine.nii.gz

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Yale/sub-0050564/mri/rp2sub-0050564_T1w_affine.nii.gz

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Yale/sub-0050564/mri/rp3sub-0050564_T1w_affine.nii.gz

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Yale/sub-0050564/mri/t_sub-0050564_T1w_affine_reorient.mat

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Yale/sub-0050564/mri/t_sub-0050564_T1w_rigid_reorient.mat

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Yale/sub-0050564/mri/thalamus_sub-0050564_T1w.csv

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Yale/sub-0050564/mri/thalamus_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/wj_sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/wmisub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/wmsub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/wp0sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/wp1sub-0050564_T1w.nii.gz

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Yale/sub-0050564/mri/wp2sub-0050564_T1w.nii.gz

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