[DATALAD RUNCMD] Compute MaxMun_b/sub-0051322

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_b/sub-0051322/anat/sub-0051322_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_b/sub-0051322"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_b/sub-0051322/label/catROI_sub-0051322_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jV/20/MD5E-s57890--9f78b06fa75ae97d76433b01e7ca08ec.mat/MD5E-s57890--9f78b06fa75ae97d76433b01e7ca08ec.mat

MaxMun_b/sub-0051322/label/catROI_sub-0051322_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/VX/ZQ/MD5E-s188900--455afc7944864293175fd5727ffabbb6.xml/MD5E-s188900--455afc7944864293175fd5727ffabbb6.xml

MaxMun_b/sub-0051322/label/catROIs_sub-0051322_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/P7/18/MD5E-s120056--960f7facec13f8823781859c634a42bc.mat/MD5E-s120056--960f7facec13f8823781859c634a42bc.mat

MaxMun_b/sub-0051322/label/catROIs_sub-0051322_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/x8/w4/MD5E-s332121--b76363fa3b8dd0897cb17d216f616ccd.xml/MD5E-s332121--b76363fa3b8dd0897cb17d216f616ccd.xml

MaxMun_b/sub-0051322/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_b/sub-0051322/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q7/vW/MD5E-s158072--ce49b234bbf0fbace09851f2c3e85732.nii.gz/MD5E-s158072--ce49b234bbf0fbace09851f2c3e85732.nii.gz

MaxMun_b/sub-0051322/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_b/sub-0051322/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6q/x7/MD5E-s176675--383f46f4796fc963ce596cd3b782d348.nii.gz/MD5E-s176675--383f46f4796fc963ce596cd3b782d348.nii.gz

MaxMun_b/sub-0051322/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_b/sub-0051322/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VQ/W7/MD5E-s241372--a18aeb9e701bb01bf8db6ec5e8372aa0.nii.gz/MD5E-s241372--a18aeb9e701bb01bf8db6ec5e8372aa0.nii.gz

MaxMun_b/sub-0051322/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_b/sub-0051322/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F8/73/MD5E-s267466--07a6e525c5c7454c93ac2d3f67161272.nii.gz/MD5E-s267466--07a6e525c5c7454c93ac2d3f67161272.nii.gz

MaxMun_b/sub-0051322/mri/Tian_Subcortex_S2_7T_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_b/sub-0051322/mri/Tian_Subcortex_S2_7T_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jX/vf/MD5E-s22217--6e04f43edfbd8e9249af180f1499f0c7.nii.gz/MD5E-s22217--6e04f43edfbd8e9249af180f1499f0c7.nii.gz

MaxMun_b/sub-0051322/mri/aal3_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_b/sub-0051322/mri/aal3_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_b/sub-0051322/mri/anatomy3_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_b/sub-0051322/mri/anatomy3_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qZ/wg/MD5E-s128490--b1d3d25f6166b0cc01e676450a49ac04.nii.gz/MD5E-s128490--b1d3d25f6166b0cc01e676450a49ac04.nii.gz

MaxMun_b/sub-0051322/mri/anon_misub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FZ/KZ/MD5E-s4484630--11d1acd9f36c5f63fa4b9c67d1bba956.nii.gz/MD5E-s4484630--11d1acd9f36c5f63fa4b9c67d1bba956.nii.gz

MaxMun_b/sub-0051322/mri/anon_msub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zx/55/MD5E-s8049051--b85cc64df36e5720ae78a60730a8032a.nii.gz/MD5E-s8049051--b85cc64df36e5720ae78a60730a8032a.nii.gz

MaxMun_b/sub-0051322/mri/cat_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/gz/MD5E-s96033--cc9f4e0e03f175623e27b6a6eb0d8375.nii.gz/MD5E-s96033--cc9f4e0e03f175623e27b6a6eb0d8375.nii.gz

MaxMun_b/sub-0051322/mri/cobra_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_b/sub-0051322/mri/cobra_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0p/Kv/MD5E-s46245--34dfd5d15f9018561360b07ac639ff8e.nii.gz/MD5E-s46245--34dfd5d15f9018561360b07ac639ff8e.nii.gz

MaxMun_b/sub-0051322/mri/hammers_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_b/sub-0051322/mri/hammers_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5g/zW/MD5E-s141598--c5447320387d8c7d8394fab90f7e5c9a.nii.gz/MD5E-s141598--c5447320387d8c7d8394fab90f7e5c9a.nii.gz

MaxMun_b/sub-0051322/mri/ibsr_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_b/sub-0051322/mri/ibsr_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZG/8z/MD5E-s149681--fba35b02e0d6874ad37c3aed8539ecc3.nii.gz/MD5E-s149681--fba35b02e0d6874ad37c3aed8539ecc3.nii.gz

MaxMun_b/sub-0051322/mri/it_sub-0051322_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/32/2x/MD5E-s283--35f385d224bab163885862328779f4ed.mat/MD5E-s283--35f385d224bab163885862328779f4ed.mat

MaxMun_b/sub-0051322/mri/it_sub-0051322_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xg/1J/MD5E-s283--dfd3d1b286d2ee703eeb9501a6dced4b.mat/MD5E-s283--dfd3d1b286d2ee703eeb9501a6dced4b.mat

MaxMun_b/sub-0051322/mri/iy_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gm/j7/MD5E-s43791199--9cf5840dcb1f6554e8cd0e019cc23fd1.nii.gz/MD5E-s43791199--9cf5840dcb1f6554e8cd0e019cc23fd1.nii.gz

MaxMun_b/sub-0051322/mri/julichbrain_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MaxMun_b/sub-0051322/mri/julichbrain_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pJ/18/MD5E-s190780--6ca23338460691432528dc0cdeed0f8d.nii.gz/MD5E-s190780--6ca23338460691432528dc0cdeed0f8d.nii.gz

MaxMun_b/sub-0051322/mri/lpba40_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MaxMun_b/sub-0051322/mri/lpba40_sub-0051322_T1w.nii.gz

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+../../../.git/annex/objects/j4/MK/MD5E-s138930--8cc6f5b43b5ece357cff6bd2952dd7e7.nii.gz/MD5E-s138930--8cc6f5b43b5ece357cff6bd2952dd7e7.nii.gz

MaxMun_b/sub-0051322/mri/m0wp1sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K9/fV/MD5E-s2582815--397ec04c515a5da534fc73fb9185527b.nii.gz/MD5E-s2582815--397ec04c515a5da534fc73fb9185527b.nii.gz

MaxMun_b/sub-0051322/mri/m0wp2sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5p/pZ/MD5E-s2292935--2f1ae5c31321b9850236dd9b12a7b4e9.nii.gz/MD5E-s2292935--2f1ae5c31321b9850236dd9b12a7b4e9.nii.gz

MaxMun_b/sub-0051322/mri/m0wp3sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_b/sub-0051322/mri/mori_sub-0051322_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MaxMun_b/sub-0051322/mri/mori_sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_b/sub-0051322/mri/mwp1sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7v/7P/MD5E-s2587111--ee9f03264d077cfb5acb2f17b021d4d4.nii.gz/MD5E-s2587111--ee9f03264d077cfb5acb2f17b021d4d4.nii.gz

MaxMun_b/sub-0051322/mri/mwp2sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K9/PW/MD5E-s2290939--0411cebc1d4bf9c79ad67e13af09edc8.nii.gz/MD5E-s2290939--0411cebc1d4bf9c79ad67e13af09edc8.nii.gz

MaxMun_b/sub-0051322/mri/mwp3sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1g/Gj/MD5E-s2532731--4e04ab64d6b7a395bb1f37a15c89bf5d.nii.gz/MD5E-s2532731--4e04ab64d6b7a395bb1f37a15c89bf5d.nii.gz

MaxMun_b/sub-0051322/mri/neuromorphometrics_sub-0051322_T1w.csv

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MaxMun_b/sub-0051322/mri/neuromorphometrics_sub-0051322_T1w.nii.gz

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MaxMun_b/sub-0051322/mri/p0sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_b/sub-0051322/mri/p1sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_b/sub-0051322/mri/p2sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_b/sub-0051322/mri/p3sub-0051322_T1w.nii.gz

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MaxMun_b/sub-0051322/mri/rp1sub-0051322_T1w_affine.nii.gz

@@ -0,0 +1 @@
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MaxMun_b/sub-0051322/mri/rp2sub-0051322_T1w_affine.nii.gz

@@ -0,0 +1 @@
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MaxMun_b/sub-0051322/mri/rp3sub-0051322_T1w_affine.nii.gz

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MaxMun_b/sub-0051322/mri/t_sub-0051322_T1w_affine_reorient.mat

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MaxMun_b/sub-0051322/mri/t_sub-0051322_T1w_rigid_reorient.mat

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MaxMun_b/sub-0051322/mri/thalamus_sub-0051322_T1w.csv

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MaxMun_b/sub-0051322/mri/thalamus_sub-0051322_T1w.nii.gz

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MaxMun_b/sub-0051322/mri/wj_sub-0051322_T1w.nii.gz

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MaxMun_b/sub-0051322/mri/wmisub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_b/sub-0051322/mri/wmsub-0051322_T1w.nii.gz

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MaxMun_b/sub-0051322/mri/wp0sub-0051322_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_b/sub-0051322/mri/wp1sub-0051322_T1w.nii.gz

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