[DATALAD RUNCMD] Compute NYU/sub-0050978

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/NYU/sub-0050978/anat/sub-0050978_T1w.nii.gz"
 ],
 "outputs": [
  "NYU/sub-0050978"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU/sub-0050978/label/catROI_sub-0050978_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/QF/1X/MD5E-s57951--4d59f659e90e90b3441f7cd953d60acc.mat/MD5E-s57951--4d59f659e90e90b3441f7cd953d60acc.mat

NYU/sub-0050978/label/catROI_sub-0050978_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/F8/QV/MD5E-s188744--13734a15807d8dda567cfbfddfbb8dfc.xml/MD5E-s188744--13734a15807d8dda567cfbfddfbb8dfc.xml

NYU/sub-0050978/label/catROIs_sub-0050978_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/GW/17/MD5E-s120242--947c4d6593b12d232f5ec5ae0436485a.mat/MD5E-s120242--947c4d6593b12d232f5ec5ae0436485a.mat

NYU/sub-0050978/label/catROIs_sub-0050978_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9f/2G/MD5E-s332080--bac5b8abfa985f0e364744fa62400704.xml/MD5E-s332080--bac5b8abfa985f0e364744fa62400704.xml

NYU/sub-0050978/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050978_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU/sub-0050978/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050978_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0x/3J/MD5E-s149072--5ac9172de4f31ef81909e5ca5add19ac.nii.gz/MD5E-s149072--5ac9172de4f31ef81909e5ca5add19ac.nii.gz

NYU/sub-0050978/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050978_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU/sub-0050978/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050978_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/18/6G/MD5E-s165808--9b49ca84466b5a8c510c5df5ba02f5d9.nii.gz/MD5E-s165808--9b49ca84466b5a8c510c5df5ba02f5d9.nii.gz

NYU/sub-0050978/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050978_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU/sub-0050978/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050978_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g2/7w/MD5E-s223574--bab6402fe1fac4b20b0c135cb6959442.nii.gz/MD5E-s223574--bab6402fe1fac4b20b0c135cb6959442.nii.gz

NYU/sub-0050978/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050978_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU/sub-0050978/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050978_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JV/4q/MD5E-s247150--dc9389db5b7506d5d957351fe89177d0.nii.gz/MD5E-s247150--dc9389db5b7506d5d957351fe89177d0.nii.gz

NYU/sub-0050978/mri/Tian_Subcortex_S2_7T_sub-0050978_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU/sub-0050978/mri/Tian_Subcortex_S2_7T_sub-0050978_T1w.nii.gz

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+../../../.git/annex/objects/jv/v1/MD5E-s20530--5ae8b8fa5725a210c22331bbcba8da24.nii.gz/MD5E-s20530--5ae8b8fa5725a210c22331bbcba8da24.nii.gz

NYU/sub-0050978/mri/aal3_sub-0050978_T1w.csv

@@ -0,0 +1 @@
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NYU/sub-0050978/mri/aal3_sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/anatomy3_sub-0050978_T1w.csv

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NYU/sub-0050978/mri/anatomy3_sub-0050978_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0050978/mri/anon_misub-0050978_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0050978/mri/anon_msub-0050978_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/92/V3/MD5E-s6969081--5aaefb461f2d680ddd584401e2645ee3.nii.gz/MD5E-s6969081--5aaefb461f2d680ddd584401e2645ee3.nii.gz

NYU/sub-0050978/mri/cat_sub-0050978_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5f/F2/MD5E-s89595--04232431d93ab107a58907655f319d08.nii.gz/MD5E-s89595--04232431d93ab107a58907655f319d08.nii.gz

NYU/sub-0050978/mri/cobra_sub-0050978_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU/sub-0050978/mri/cobra_sub-0050978_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0050978/mri/hammers_sub-0050978_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU/sub-0050978/mri/hammers_sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/ibsr_sub-0050978_T1w.csv

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NYU/sub-0050978/mri/ibsr_sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/it_sub-0050978_T1w_affine_reorient.mat

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NYU/sub-0050978/mri/it_sub-0050978_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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NYU/sub-0050978/mri/iy_sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/julichbrain_sub-0050978_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU/sub-0050978/mri/julichbrain_sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/lpba40_sub-0050978_T1w.csv

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NYU/sub-0050978/mri/lpba40_sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/m0wp1sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/m0wp2sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/m0wp3sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/mori_sub-0050978_T1w.csv

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NYU/sub-0050978/mri/mori_sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/mwp1sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/mwp2sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/mwp3sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/neuromorphometrics_sub-0050978_T1w.csv

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NYU/sub-0050978/mri/neuromorphometrics_sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/p0sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/p1sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/p2sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/p3sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/rp1sub-0050978_T1w_affine.nii.gz

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NYU/sub-0050978/mri/rp2sub-0050978_T1w_affine.nii.gz

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NYU/sub-0050978/mri/rp3sub-0050978_T1w_affine.nii.gz

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NYU/sub-0050978/mri/t_sub-0050978_T1w_affine_reorient.mat

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NYU/sub-0050978/mri/t_sub-0050978_T1w_rigid_reorient.mat

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NYU/sub-0050978/mri/thalamus_sub-0050978_T1w.csv

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NYU/sub-0050978/mri/thalamus_sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/wj_sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/wmisub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/wmsub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/wp0sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/wp1sub-0050978_T1w.nii.gz

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NYU/sub-0050978/mri/wp2sub-0050978_T1w.nii.gz

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