[DATALAD RUNCMD] Compute Trinity/sub-0050267

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050267/anat/sub-0050267_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050267"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050267/label/catROI_sub-0050267_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZQ/mJ/MD5E-s61355--450358534f197bd22ad95b9dd616fd15.mat/MD5E-s61355--450358534f197bd22ad95b9dd616fd15.mat

Trinity/sub-0050267/label/catROI_sub-0050267_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/00/X8/MD5E-s188722--2e54c5e93b59cf809a1042610f7b5960.xml/MD5E-s188722--2e54c5e93b59cf809a1042610f7b5960.xml

Trinity/sub-0050267/label/catROIs_sub-0050267_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/05/J7/MD5E-s119967--74c666c2e31055e19398839adcf96559.mat/MD5E-s119967--74c666c2e31055e19398839adcf96559.mat

Trinity/sub-0050267/label/catROIs_sub-0050267_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/gM/Pq/MD5E-s332120--efe61bb67e1f67a43c533f43c58abc18.xml/MD5E-s332120--efe61bb67e1f67a43c533f43c58abc18.xml

Trinity/sub-0050267/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050267_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0050267/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050267_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f0/V5/MD5E-s180487--c0bd303101b9d155377091196170cdfa.nii.gz/MD5E-s180487--c0bd303101b9d155377091196170cdfa.nii.gz

Trinity/sub-0050267/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050267_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050267/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050267_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050267/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050267_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2m/3G/MD5E-s272678--7b06a8f4362df9982c899f81a0a3be60.nii.gz/MD5E-s272678--7b06a8f4362df9982c899f81a0a3be60.nii.gz

Trinity/sub-0050267/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050267_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050267/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050267_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jV/14/MD5E-s303472--50c571be90ea3b8d36799b2e8d5ffe27.nii.gz/MD5E-s303472--50c571be90ea3b8d36799b2e8d5ffe27.nii.gz

Trinity/sub-0050267/mri/Tian_Subcortex_S2_7T_sub-0050267_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050267/mri/Tian_Subcortex_S2_7T_sub-0050267_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050267/mri/aal3_sub-0050267_T1w.csv

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Trinity/sub-0050267/mri/aal3_sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/anatomy3_sub-0050267_T1w.csv

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Trinity/sub-0050267/mri/anatomy3_sub-0050267_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050267/mri/anon_misub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/anon_msub-0050267_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qJ/Mx/MD5E-s9355146--9b6ebb2848f2dca7c2741fd37382342c.nii.gz/MD5E-s9355146--9b6ebb2848f2dca7c2741fd37382342c.nii.gz

Trinity/sub-0050267/mri/cat_sub-0050267_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050267/mri/cobra_sub-0050267_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050267/mri/cobra_sub-0050267_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050267/mri/hammers_sub-0050267_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050267/mri/hammers_sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/ibsr_sub-0050267_T1w.csv

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Trinity/sub-0050267/mri/ibsr_sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/it_sub-0050267_T1w_affine_reorient.mat

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Trinity/sub-0050267/mri/it_sub-0050267_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gM/Kj/MD5E-s282--b79c9749626c9c9308e8283b295c9311.mat/MD5E-s282--b79c9749626c9c9308e8283b295c9311.mat

Trinity/sub-0050267/mri/iy_sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/julichbrain_sub-0050267_T1w.csv

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Trinity/sub-0050267/mri/julichbrain_sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/lpba40_sub-0050267_T1w.csv

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Trinity/sub-0050267/mri/lpba40_sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/m0wp1sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/m0wp2sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/m0wp3sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/mori_sub-0050267_T1w.csv

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Trinity/sub-0050267/mri/mori_sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/mwp1sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/mwp2sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/mwp3sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/neuromorphometrics_sub-0050267_T1w.csv

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Trinity/sub-0050267/mri/neuromorphometrics_sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/p0sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/p1sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/p2sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/p3sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/rp1sub-0050267_T1w_affine.nii.gz

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Trinity/sub-0050267/mri/rp2sub-0050267_T1w_affine.nii.gz

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Trinity/sub-0050267/mri/rp3sub-0050267_T1w_affine.nii.gz

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Trinity/sub-0050267/mri/t_sub-0050267_T1w_affine_reorient.mat

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Trinity/sub-0050267/mri/t_sub-0050267_T1w_rigid_reorient.mat

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Trinity/sub-0050267/mri/thalamus_sub-0050267_T1w.csv

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Trinity/sub-0050267/mri/thalamus_sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/wj_sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/wmisub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/wp1sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/wp2sub-0050267_T1w.nii.gz

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Trinity/sub-0050267/mri/wp3sub-0050267_T1w.nii.gz

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