[DATALAD RUNCMD] Compute MaxMun_a/sub-0051367

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_a/sub-0051367/anat/sub-0051367_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_a/sub-0051367"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_a/sub-0051367/label/catROI_sub-0051367_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/f6/8G/MD5E-s57929--094662e3aaf0e0bc2349e03f0dd829b1.mat/MD5E-s57929--094662e3aaf0e0bc2349e03f0dd829b1.mat

MaxMun_a/sub-0051367/label/catROI_sub-0051367_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/z0/z7/MD5E-s188768--a6f0ac9c6e7022d8ffddf9c9fb12b082.xml/MD5E-s188768--a6f0ac9c6e7022d8ffddf9c9fb12b082.xml

MaxMun_a/sub-0051367/label/catROIs_sub-0051367_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3J/P7/MD5E-s120044--fc2757aeb3a1eb478cc718f91c40cb15.mat/MD5E-s120044--fc2757aeb3a1eb478cc718f91c40cb15.mat

MaxMun_a/sub-0051367/label/catROIs_sub-0051367_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/4X/qM/MD5E-s332128--c0ced078cef3ce1d919208fe905962a3.xml/MD5E-s332128--c0ced078cef3ce1d919208fe905962a3.xml

MaxMun_a/sub-0051367/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_a/sub-0051367/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gz/Kp/MD5E-s164987--1876a09fc276c07364a96ef671ab7473.nii.gz/MD5E-s164987--1876a09fc276c07364a96ef671ab7473.nii.gz

MaxMun_a/sub-0051367/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_a/sub-0051367/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kg/21/MD5E-s183026--1ec7f8fb7e3f3e1eb7a1f6a54af8ed52.nii.gz/MD5E-s183026--1ec7f8fb7e3f3e1eb7a1f6a54af8ed52.nii.gz

MaxMun_a/sub-0051367/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_a/sub-0051367/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xq/56/MD5E-s247843--804f84096548c5fb24b16118274d7e90.nii.gz/MD5E-s247843--804f84096548c5fb24b16118274d7e90.nii.gz

MaxMun_a/sub-0051367/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_a/sub-0051367/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vZ/J2/MD5E-s275202--9f8365fa6aa5e457c65538e113535d95.nii.gz/MD5E-s275202--9f8365fa6aa5e457c65538e113535d95.nii.gz

MaxMun_a/sub-0051367/mri/Tian_Subcortex_S2_7T_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_a/sub-0051367/mri/Tian_Subcortex_S2_7T_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fw/xj/MD5E-s22982--2dbe9a3e3a18325a470b4326c68f1aef.nii.gz/MD5E-s22982--2dbe9a3e3a18325a470b4326c68f1aef.nii.gz

MaxMun_a/sub-0051367/mri/aal3_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_a/sub-0051367/mri/aal3_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VQ/Z8/MD5E-s187598--67258d25816aab3132fd8fb380dcb0de.nii.gz/MD5E-s187598--67258d25816aab3132fd8fb380dcb0de.nii.gz

MaxMun_a/sub-0051367/mri/anatomy3_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_a/sub-0051367/mri/anatomy3_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K1/xV/MD5E-s133022--a6966b73e19fc15c173cc6d3135a59c5.nii.gz/MD5E-s133022--a6966b73e19fc15c173cc6d3135a59c5.nii.gz

MaxMun_a/sub-0051367/mri/anon_misub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xj/28/MD5E-s4587257--bf199ae9a6eedb39cfc0050588ae1fdf.nii.gz/MD5E-s4587257--bf199ae9a6eedb39cfc0050588ae1fdf.nii.gz

MaxMun_a/sub-0051367/mri/anon_msub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fg/0j/MD5E-s8839801--79bbd08dd5377956319c95785db1fbb3.nii.gz/MD5E-s8839801--79bbd08dd5377956319c95785db1fbb3.nii.gz

MaxMun_a/sub-0051367/mri/cat_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M7/3W/MD5E-s98671--7814ac8fe0aa1702d08969cf2f18ea30.nii.gz/MD5E-s98671--7814ac8fe0aa1702d08969cf2f18ea30.nii.gz

MaxMun_a/sub-0051367/mri/cobra_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_a/sub-0051367/mri/cobra_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZF/gF/MD5E-s47933--958485dc91c06d6e89241e05b84f0a7e.nii.gz/MD5E-s47933--958485dc91c06d6e89241e05b84f0a7e.nii.gz

MaxMun_a/sub-0051367/mri/hammers_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_a/sub-0051367/mri/hammers_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9Z/pq/MD5E-s147175--100129e909b63c8e9e9edfe9940272e2.nii.gz/MD5E-s147175--100129e909b63c8e9e9edfe9940272e2.nii.gz

MaxMun_a/sub-0051367/mri/ibsr_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_a/sub-0051367/mri/ibsr_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M1/30/MD5E-s156402--20ca8fa49d75dc22158bd9e2ff232310.nii.gz/MD5E-s156402--20ca8fa49d75dc22158bd9e2ff232310.nii.gz

MaxMun_a/sub-0051367/mri/it_sub-0051367_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wk/GF/MD5E-s281--7c8dc10d985d3f138c93ba1fe5a420a1.mat/MD5E-s281--7c8dc10d985d3f138c93ba1fe5a420a1.mat

MaxMun_a/sub-0051367/mri/it_sub-0051367_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/v0/PG/MD5E-s283--b19202d77ff8525d5ed4dcae2611e173.mat/MD5E-s283--b19202d77ff8525d5ed4dcae2611e173.mat

MaxMun_a/sub-0051367/mri/iy_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j7/Kf/MD5E-s46338977--51f62fea4f205319525388eeb99f928f.nii.gz/MD5E-s46338977--51f62fea4f205319525388eeb99f928f.nii.gz

MaxMun_a/sub-0051367/mri/julichbrain_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MaxMun_a/sub-0051367/mri/julichbrain_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/73/MD5E-s199739--4d05c8251c95efab7d162961ce7a0ef7.nii.gz/MD5E-s199739--4d05c8251c95efab7d162961ce7a0ef7.nii.gz

MaxMun_a/sub-0051367/mri/lpba40_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MaxMun_a/sub-0051367/mri/lpba40_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5W/m5/MD5E-s144563--41cad9e7fc81ae429db6a0ca2f21c065.nii.gz/MD5E-s144563--41cad9e7fc81ae429db6a0ca2f21c065.nii.gz

MaxMun_a/sub-0051367/mri/m0wp1sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mf/5z/MD5E-s2575660--738732a9a89259a1ea14090c85984bb0.nii.gz/MD5E-s2575660--738732a9a89259a1ea14090c85984bb0.nii.gz

MaxMun_a/sub-0051367/mri/m0wp2sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mz/jQ/MD5E-s2293854--3fa508fd636f2da2cedc4420f391ecf9.nii.gz/MD5E-s2293854--3fa508fd636f2da2cedc4420f391ecf9.nii.gz

MaxMun_a/sub-0051367/mri/m0wp3sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kM/fX/MD5E-s2523794--532088b3cfa6db41430d91f5350057ad.nii.gz/MD5E-s2523794--532088b3cfa6db41430d91f5350057ad.nii.gz

MaxMun_a/sub-0051367/mri/mori_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MaxMun_a/sub-0051367/mri/mori_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zf/9Q/MD5E-s174479--d2c7cf6204b8f85d7343aff963cff7e9.nii.gz/MD5E-s174479--d2c7cf6204b8f85d7343aff963cff7e9.nii.gz

MaxMun_a/sub-0051367/mri/mwp1sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3K/vm/MD5E-s2578665--9ed93e9e7468331fcbb1fbe331a9e324.nii.gz/MD5E-s2578665--9ed93e9e7468331fcbb1fbe331a9e324.nii.gz

MaxMun_a/sub-0051367/mri/mwp2sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mz/WQ/MD5E-s2288735--e2aef922c9dbe87311ae2a0a58ebd49c.nii.gz/MD5E-s2288735--e2aef922c9dbe87311ae2a0a58ebd49c.nii.gz

MaxMun_a/sub-0051367/mri/mwp3sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xG/Zz/MD5E-s2520077--cba7d71673a61f2f3b8d64ac46ff272a.nii.gz/MD5E-s2520077--cba7d71673a61f2f3b8d64ac46ff272a.nii.gz

MaxMun_a/sub-0051367/mri/neuromorphometrics_sub-0051367_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

MaxMun_a/sub-0051367/mri/neuromorphometrics_sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/vf/MD5E-s199805--c8c2e8029b071aa92e0dba9e72897e20.nii.gz/MD5E-s199805--c8c2e8029b071aa92e0dba9e72897e20.nii.gz

MaxMun_a/sub-0051367/mri/p0sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1z/8J/MD5E-s645153--21757d565e40a1957e37cd43103037f3.nii.gz/MD5E-s645153--21757d565e40a1957e37cd43103037f3.nii.gz

MaxMun_a/sub-0051367/mri/p1sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051367/mri/p2sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051367/mri/p3sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051367/mri/rp1sub-0051367_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jF/xF/MD5E-s444663--1b5749acd3bd6a194f7fa7152b942360.nii.gz/MD5E-s444663--1b5749acd3bd6a194f7fa7152b942360.nii.gz

MaxMun_a/sub-0051367/mri/rp2sub-0051367_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VZ/jm/MD5E-s300621--ee9b9b4691433561b22c68ce4ef1ca9d.nii.gz/MD5E-s300621--ee9b9b4691433561b22c68ce4ef1ca9d.nii.gz

MaxMun_a/sub-0051367/mri/rp3sub-0051367_T1w_affine.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051367/mri/t_sub-0051367_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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MaxMun_a/sub-0051367/mri/t_sub-0051367_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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MaxMun_a/sub-0051367/mri/thalamus_sub-0051367_T1w.csv

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MaxMun_a/sub-0051367/mri/thalamus_sub-0051367_T1w.nii.gz

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MaxMun_a/sub-0051367/mri/wj_sub-0051367_T1w.nii.gz

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MaxMun_a/sub-0051367/mri/wmisub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051367/mri/wmsub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051367/mri/wp0sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051367/mri/wp1sub-0051367_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051367/mri/wp2sub-0051367_T1w.nii.gz

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