[DATALAD RUNCMD] Compute USM/sub-0050491

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050491/anat/sub-0050491_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050491"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050491/label/catROI_sub-0050491_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/M0/gm/MD5E-s61413--76770c4c7d7c8f80fb8b54612f2ab6bc.mat/MD5E-s61413--76770c4c7d7c8f80fb8b54612f2ab6bc.mat

USM/sub-0050491/label/catROI_sub-0050491_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/W1/Zm/MD5E-s188815--2a433e5460484d63804a9a3776cf3588.xml/MD5E-s188815--2a433e5460484d63804a9a3776cf3588.xml

USM/sub-0050491/label/catROIs_sub-0050491_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/QX/WP/MD5E-s119972--2ec3e9b4f7c6ab3a166b97580ee15966.mat/MD5E-s119972--2ec3e9b4f7c6ab3a166b97580ee15966.mat

USM/sub-0050491/label/catROIs_sub-0050491_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/F1/p2/MD5E-s332158--ba6a314f3f607f9ccfd1078e55143acb.xml/MD5E-s332158--ba6a314f3f607f9ccfd1078e55143acb.xml

USM/sub-0050491/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050491/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g4/Gz/MD5E-s423679--14c36c1c2bb03bba4f68e6b7ed8dd022.nii.gz/MD5E-s423679--14c36c1c2bb03bba4f68e6b7ed8dd022.nii.gz

USM/sub-0050491/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050491/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G0/52/MD5E-s469911--c20af98eadd3ea52a1934e7fdf6c14af.nii.gz/MD5E-s469911--c20af98eadd3ea52a1934e7fdf6c14af.nii.gz

USM/sub-0050491/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050491/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FV/K9/MD5E-s676937--c57bce4456a6f4528d5d985b146ccdbf.nii.gz/MD5E-s676937--c57bce4456a6f4528d5d985b146ccdbf.nii.gz

USM/sub-0050491/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050491/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/xp/MD5E-s742722--6a9ef5f43b68ad2c4fa06d19793fb8f4.nii.gz/MD5E-s742722--6a9ef5f43b68ad2c4fa06d19793fb8f4.nii.gz

USM/sub-0050491/mri/Tian_Subcortex_S2_7T_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050491/mri/Tian_Subcortex_S2_7T_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KK/p8/MD5E-s71154--744443e6518eb9d1149a2d812f01569b.nii.gz/MD5E-s71154--744443e6518eb9d1149a2d812f01569b.nii.gz

USM/sub-0050491/mri/aal3_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050491/mri/aal3_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q4/k7/MD5E-s477203--c34ac1828acbedabb5c5f99f7918c1b2.nii.gz/MD5E-s477203--c34ac1828acbedabb5c5f99f7918c1b2.nii.gz

USM/sub-0050491/mri/anatomy3_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050491/mri/anatomy3_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J1/XJ/MD5E-s353847--4890a80a1f582456a3199b4ea7ce11df.nii.gz/MD5E-s353847--4890a80a1f582456a3199b4ea7ce11df.nii.gz

USM/sub-0050491/mri/anon_misub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K8/Q5/MD5E-s22325479--14b54c1802d0c2ab8e4636024c600bef.nii.gz/MD5E-s22325479--14b54c1802d0c2ab8e4636024c600bef.nii.gz

USM/sub-0050491/mri/anon_msub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m5/0g/MD5E-s45082590--6b8515a150e8e48ecfe485b7690662db.nii.gz/MD5E-s45082590--6b8515a150e8e48ecfe485b7690662db.nii.gz

USM/sub-0050491/mri/cat_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qp/Xj/MD5E-s266988--c309848e1d4b72426e29d91f0d64a9b5.nii.gz/MD5E-s266988--c309848e1d4b72426e29d91f0d64a9b5.nii.gz

USM/sub-0050491/mri/cobra_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050491/mri/cobra_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/71/qx/MD5E-s131954--49bd09ee1d0e06e057b4fd205d245b0b.nii.gz/MD5E-s131954--49bd09ee1d0e06e057b4fd205d245b0b.nii.gz

USM/sub-0050491/mri/hammers_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050491/mri/hammers_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wk/W7/MD5E-s380317--eef91dfa8b3616cde4be8833f2565d74.nii.gz/MD5E-s380317--eef91dfa8b3616cde4be8833f2565d74.nii.gz

USM/sub-0050491/mri/ibsr_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050491/mri/ibsr_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vj/Z0/MD5E-s404264--1390558238567d94e60ee09174606711.nii.gz/MD5E-s404264--1390558238567d94e60ee09174606711.nii.gz

USM/sub-0050491/mri/it_sub-0050491_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/g4/gQ/MD5E-s284--6042a18b43c838a6639cf1e17ff4c25e.mat/MD5E-s284--6042a18b43c838a6639cf1e17ff4c25e.mat

USM/sub-0050491/mri/it_sub-0050491_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XZ/z7/MD5E-s283--a4ee286c39c6798219146b26e2bb7d3c.mat/MD5E-s283--a4ee286c39c6798219146b26e2bb7d3c.mat

USM/sub-0050491/mri/iy_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/km/68/MD5E-s177486872--d7abee46e31f2377cb48e6dfee1faa0a.nii.gz/MD5E-s177486872--d7abee46e31f2377cb48e6dfee1faa0a.nii.gz

USM/sub-0050491/mri/julichbrain_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050491/mri/julichbrain_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4P/0q/MD5E-s501179--07c09235012ff9be0c922ae75f18ca34.nii.gz/MD5E-s501179--07c09235012ff9be0c922ae75f18ca34.nii.gz

USM/sub-0050491/mri/lpba40_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050491/mri/lpba40_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8f/g0/MD5E-s373709--5721392766433439f469844000f8c83c.nii.gz/MD5E-s373709--5721392766433439f469844000f8c83c.nii.gz

USM/sub-0050491/mri/m0wp1sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pf/wm/MD5E-s2557464--b68d78200a011f98d1ff8e648686a0de.nii.gz/MD5E-s2557464--b68d78200a011f98d1ff8e648686a0de.nii.gz

USM/sub-0050491/mri/m0wp2sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/Kf/MD5E-s2279208--7085431208583d5c0ed73aee9425b6c7.nii.gz/MD5E-s2279208--7085431208583d5c0ed73aee9425b6c7.nii.gz

USM/sub-0050491/mri/m0wp3sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gp/Vq/MD5E-s2408632--f9d650ccfe1b2ebe56715acb1113dc92.nii.gz/MD5E-s2408632--f9d650ccfe1b2ebe56715acb1113dc92.nii.gz

USM/sub-0050491/mri/mori_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050491/mri/mori_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050491/mri/mwp1sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050491/mri/mwp2sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f6/4X/MD5E-s2278421--340b3bd3a4461332001113704abd42cc.nii.gz/MD5E-s2278421--340b3bd3a4461332001113704abd42cc.nii.gz

USM/sub-0050491/mri/mwp3sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/vK/MD5E-s2408718--6a535e5c9b1f201ca44598fdd7b44551.nii.gz/MD5E-s2408718--6a535e5c9b1f201ca44598fdd7b44551.nii.gz

USM/sub-0050491/mri/neuromorphometrics_sub-0050491_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

USM/sub-0050491/mri/neuromorphometrics_sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050491/mri/p0sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050491/mri/p1sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jp/Fp/MD5E-s4222747--fe99009c878de39d618ac66a365233a2.nii.gz/MD5E-s4222747--fe99009c878de39d618ac66a365233a2.nii.gz

USM/sub-0050491/mri/p2sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050491/mri/p3sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050491/mri/rp1sub-0050491_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050491/mri/rp2sub-0050491_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050491/mri/rp3sub-0050491_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zp/qW/MD5E-s251814--29dd3901b811e270d52eff764f193c8e.nii.gz/MD5E-s251814--29dd3901b811e270d52eff764f193c8e.nii.gz

USM/sub-0050491/mri/t_sub-0050491_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/v3/xm/MD5E-s282--e1218f407538fe04759e81dfe22a1ac5.mat/MD5E-s282--e1218f407538fe04759e81dfe22a1ac5.mat

USM/sub-0050491/mri/t_sub-0050491_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/63/vF/MD5E-s284--f129485dc5969276d0d2e8f721368513.mat/MD5E-s284--f129485dc5969276d0d2e8f721368513.mat

USM/sub-0050491/mri/thalamus_sub-0050491_T1w.csv

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USM/sub-0050491/mri/thalamus_sub-0050491_T1w.nii.gz

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USM/sub-0050491/mri/wj_sub-0050491_T1w.nii.gz

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USM/sub-0050491/mri/wmisub-0050491_T1w.nii.gz

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USM/sub-0050491/mri/wmsub-0050491_T1w.nii.gz

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USM/sub-0050491/mri/wp0sub-0050491_T1w.nii.gz

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USM/sub-0050491/mri/wp1sub-0050491_T1w.nii.gz

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USM/sub-0050491/mri/wp2sub-0050491_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050491/mri/wp3sub-0050491_T1w.nii.gz

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USM/sub-0050491/mri/y_sub-0050491_T1w.nii.gz

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