[DATALAD RUNCMD] Compute Pitt/sub-0050052

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050052/anat/sub-0050052_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050052"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050052/label/catROI_sub-0050052_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/j0/XQ/MD5E-s61305--4cc6c281ba402c4da2ac46cccb22286f.mat/MD5E-s61305--4cc6c281ba402c4da2ac46cccb22286f.mat

Pitt/sub-0050052/label/catROI_sub-0050052_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/42/WP/MD5E-s188826--655bb878cc1cf260a6976974c4f06117.xml/MD5E-s188826--655bb878cc1cf260a6976974c4f06117.xml

Pitt/sub-0050052/label/catROIs_sub-0050052_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/FM/MX/MD5E-s120190--1deb8c74cd8fec1b7997661726c0d684.mat/MD5E-s120190--1deb8c74cd8fec1b7997661726c0d684.mat

Pitt/sub-0050052/label/catROIs_sub-0050052_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/47/V2/MD5E-s332180--3030db544494d8ac74680909798fdedf.xml/MD5E-s332180--3030db544494d8ac74680909798fdedf.xml

Pitt/sub-0050052/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050052_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050052/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050052_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3M/J5/MD5E-s159855--067f59357e6dbf3bd5e2720b598d5413.nii.gz/MD5E-s159855--067f59357e6dbf3bd5e2720b598d5413.nii.gz

Pitt/sub-0050052/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050052_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050052/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050052_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WF/jK/MD5E-s179671--17cd733f7e3151b97622927eb5c97bc0.nii.gz/MD5E-s179671--17cd733f7e3151b97622927eb5c97bc0.nii.gz

Pitt/sub-0050052/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050052_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050052/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050052_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7j/pV/MD5E-s241695--bc44352ac071eed88bb3950f8006c21d.nii.gz/MD5E-s241695--bc44352ac071eed88bb3950f8006c21d.nii.gz

Pitt/sub-0050052/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050052_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050052/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050052_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gQ/P0/MD5E-s270163--428de37059d00dc14a75f4569334f1f5.nii.gz/MD5E-s270163--428de37059d00dc14a75f4569334f1f5.nii.gz

Pitt/sub-0050052/mri/Tian_Subcortex_S2_7T_sub-0050052_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Pitt/sub-0050052/mri/Tian_Subcortex_S2_7T_sub-0050052_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qQ/pq/MD5E-s24166--bd33bf85e526fd9ac4bf8f6ced2cfc95.nii.gz/MD5E-s24166--bd33bf85e526fd9ac4bf8f6ced2cfc95.nii.gz

Pitt/sub-0050052/mri/aal3_sub-0050052_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050052/mri/aal3_sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/anatomy3_sub-0050052_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050052/mri/anatomy3_sub-0050052_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2j/J5/MD5E-s131323--aeea0a00a3e08781090604a478dd3bb8.nii.gz/MD5E-s131323--aeea0a00a3e08781090604a478dd3bb8.nii.gz

Pitt/sub-0050052/mri/anon_misub-0050052_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050052/mri/anon_msub-0050052_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j8/Gv/MD5E-s12087880--ade5cdea00a43a0d6c3ff63d23e7374f.nii.gz/MD5E-s12087880--ade5cdea00a43a0d6c3ff63d23e7374f.nii.gz

Pitt/sub-0050052/mri/cat_sub-0050052_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vz/Q7/MD5E-s96810--1afc7be64174e31aee239835f9bfe0cb.nii.gz/MD5E-s96810--1afc7be64174e31aee239835f9bfe0cb.nii.gz

Pitt/sub-0050052/mri/cobra_sub-0050052_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050052/mri/cobra_sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/hammers_sub-0050052_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050052/mri/hammers_sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/ibsr_sub-0050052_T1w.csv

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Pitt/sub-0050052/mri/ibsr_sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/it_sub-0050052_T1w_affine_reorient.mat

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+../../../.git/annex/objects/Xk/M0/MD5E-s282--3ed3627a6cad85fa4587d6beacd268e3.mat/MD5E-s282--3ed3627a6cad85fa4587d6beacd268e3.mat

Pitt/sub-0050052/mri/it_sub-0050052_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/xw/1f/MD5E-s282--cf79e7d032ee751d25adecf27fee02ad.mat/MD5E-s282--cf79e7d032ee751d25adecf27fee02ad.mat

Pitt/sub-0050052/mri/iy_sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/julichbrain_sub-0050052_T1w.csv

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Pitt/sub-0050052/mri/julichbrain_sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/lpba40_sub-0050052_T1w.csv

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Pitt/sub-0050052/mri/lpba40_sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/m0wp1sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/m0wp2sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/m0wp3sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/mori_sub-0050052_T1w.csv

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Pitt/sub-0050052/mri/mori_sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/mwp1sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/mwp2sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/mwp3sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/neuromorphometrics_sub-0050052_T1w.csv

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Pitt/sub-0050052/mri/neuromorphometrics_sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/p0sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/p1sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/p2sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/p3sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/rp1sub-0050052_T1w_affine.nii.gz

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Pitt/sub-0050052/mri/rp2sub-0050052_T1w_affine.nii.gz

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Pitt/sub-0050052/mri/rp3sub-0050052_T1w_affine.nii.gz

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Pitt/sub-0050052/mri/t_sub-0050052_T1w_affine_reorient.mat

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Pitt/sub-0050052/mri/t_sub-0050052_T1w_rigid_reorient.mat

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Pitt/sub-0050052/mri/thalamus_sub-0050052_T1w.csv

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Pitt/sub-0050052/mri/thalamus_sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/wj_sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/wmisub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/wmsub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/wp0sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/wp1sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/wp2sub-0050052_T1w.nii.gz

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Pitt/sub-0050052/mri/wp3sub-0050052_T1w.nii.gz

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