relacsplugins.cfg 16 KB

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  1. *Metadata
  2. Recording:
  3. Recording quality: [ Good, ~, good, poor, Poor, Fair, Good ]
  4. Comment : ~
  5. maybe a deep E-cell:
  6. Experimenter : [ Jan Grewe, Dennis Huben, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Jan Benda ]
  7. WaterTemperature : 27.2°C
  8. WaterConductivity: 350uS/cm
  9. Cell:
  10. CellType (Cell type) : [ P-unit, unknow, E-Cell, unkown, E-cell, E-cell superficial, I-Cell, P-unit, Ampullary, T-unit ]
  11. Structure (Recording location): [ Brain, Nerve, Brain ]
  12. BrainRegion : [ ELL, Torus, n.A., ELL ]
  13. BrainSubRegion : [ CMS, LS, CLS, CMS, MS ]
  14. Depth : -1504um
  15. Lateral position : 0.85mm
  16. Transverse section : -10
  17. Subject:
  18. Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
  19. Gender (Sex): [ unknown, unknown, Male, Female ]
  20. Size : 16cm
  21. Weight : 17.4g
  22. Identifier : "2016lepto79"
  23. -Preparation-:
  24. Type : [ in vivo, in vivo, slice ]
  25. Anaesthesia : true
  26. Anaesthetic (Drug) : MS 222
  27. AnaestheticDose (Concentration): 125mg/l
  28. LocalAnaesthesia : true
  29. LocalAnaesthetic (Drug) : Lidocaine
  30. Immobilization : true
  31. ImmobilizationDrug (Drug) : Tubocurarin 5mg/L
  32. ImmobilizationDose : 60ul
  33. *Control: Session
  34. ephys: true
  35. *Control: AmplifierControl
  36. initmode : [ Bridge, Current-clamp, Dynamic-clamp, Voltage-clamp, Manual selection ]
  37. resistancecurrent: 1nA
  38. adjust : false
  39. maxresistance : 100MOhm
  40. buzzpulse : 1000ms
  41. showbridge : true
  42. showcc : false
  43. showdc : false
  44. showvc : false
  45. showmanual : false
  46. syncpulse : 10us
  47. syncmode : 0samples
  48. *Control: SpectrumAnalyzer
  49. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  50. origin : [ before end of data, before signal, after signal ]
  51. offset : 0ms
  52. duration : 1000ms
  53. resolution: 10Hz
  54. overlap : true
  55. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  56. fmax : 500Hz
  57. decibel : true
  58. pmin : -50dB
  59. *Model: PUnitModel
  60. General:
  61. EOD:
  62. eodtype : [ Sine, None, Sine, Apteronotus, Eigenmannia ]
  63. eodfreq : 800Hz
  64. eodfreqsd : 10Hz
  65. eodfreqtau : 10000s
  66. eodlocalamplitude : 1mV/cm
  67. eodglobalamplitude: 1mV/cm
  68. localstimulusgain : 1.00
  69. globalstimulusgain: 0.00
  70. stimulusgain : 1.00
  71. Spikes:
  72. voltagescale: 0.5
  73. Spike generator:
  74. spikemodel: [ Wang-Buzsaki, Stimulus, Passive membrane, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
  75. noised : 0
  76. deltat : 0.05ms
  77. integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
  78. Voltage-gated current 1 - activation only:
  79. gmc : 0
  80. emc : -90mV
  81. mvmc : -40mV
  82. mwmc : 10mV
  83. taumc: 10ms
  84. Voltage-gated current 2 - activation and inactivation:
  85. gmhc : 0
  86. emhc : -90mV
  87. mvmhc : -40mV
  88. mwmhc : 10mV
  89. taummhc: 10ms
  90. pmmhc : 1
  91. hvmhc : -40mV
  92. hwmhc : 10mV
  93. tauhmhc: 10ms
  94. pmhhc : 1
  95. *Model: Stimulus
  96. Input:
  97. gain : 1
  98. offset: 0muA/cm^2
  99. *Model: Passive membrane
  100. Parameter:
  101. R: 50MOhm
  102. C: 25pF
  103. Input:
  104. gain : 1
  105. offset: 0muA/cm^2
  106. *Model: Morris-Lecar
  107. General:
  108. params: [ Custom, Type I, Type II ]
  109. Calcium current:
  110. gca : 4nS
  111. eca : 120mV
  112. mvca: -1.2mV
  113. mkca: 18mV
  114. Potassium current:
  115. gk : 8nS
  116. ek : -84mV
  117. mvk : 12mV
  118. mkk : 17.4mV
  119. mphik: 0.067kHz
  120. Leak current:
  121. gl: 2nS
  122. el: -60mV
  123. c : 20pF
  124. Input:
  125. timescale: 10
  126. gain : 1
  127. offset : 40muA/cm^2
  128. *Model: Hodgkin-Huxley
  129. Sodium current:
  130. gna: 120mS/cm^2
  131. ena: 50mV
  132. Potassium current:
  133. gk: 36mS/cm^2
  134. ek: -77mV
  135. Leak current:
  136. gl : 0.3mS/cm^2
  137. el : -54.4mV
  138. c : 1muF/cm^2
  139. phi: 1
  140. Input:
  141. gain : 1
  142. offset: 0muA/cm^2
  143. *Model: Connor
  144. Sodium current:
  145. gna: 120mS/cm^2
  146. ena: 50mV
  147. Potassium current:
  148. gk: 20mS/cm^2
  149. ek: -77mV
  150. A current:
  151. gka: 47mS/cm^2
  152. eka: -80mV
  153. Leak current:
  154. gl : 0.3mS/cm^2
  155. el : -22mV
  156. c : 1muF/cm^2
  157. phi: 1
  158. Input:
  159. gain : 1
  160. offset: 0muA/cm^2
  161. *Model: Wang-Buzsaki
  162. Sodium current:
  163. gna: 35mS/cm^2
  164. ena: 55mV
  165. Potassium current:
  166. gk: 9mS/cm^2
  167. ek: -90mV
  168. Leak current:
  169. gl : 0.1mS/cm^2
  170. el : -65mV
  171. c : 1muF/cm^2
  172. phi: 5
  173. Input:
  174. gain : 1
  175. offset: 0muA/cm^2
  176. *Event Detector: Spikes-1
  177. Detector:
  178. minthresh: 4.0mV
  179. decay : 1sec
  180. ratio : 2%
  181. testwidth: false
  182. maxwidth : 2.0ms
  183. Indicators:
  184. resolution : 0.10mV
  185. trendthresh: 10%
  186. trendtime : 2.0sec
  187. *Event Detector: EOD
  188. threshold : 0.74mV
  189. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  190. *Event Detector: Chirps
  191. minthresh: 10Hz
  192. *Event Detector: LocalEOD-1
  193. threshold : 0.7mV
  194. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  195. *Event Detector: LocalBeat-1
  196. minthresh: 0.080mV
  197. *Event Detector: GlobalEFieldStimulus
  198. threshold : 9.1217mV
  199. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  200. *RePro: Pause
  201. duration : 1sec
  202. savedata : false
  203. plotwidth: 0sec
  204. *RePro: Record
  205. duration : 1sec
  206. plotwidth: 0sec
  207. dioout : false
  208. diodevice: dio-1
  209. dioline : 0
  210. *RePro: SaveTraces
  211. General:
  212. duration : 1sec
  213. savedata : false
  214. split : false
  215. dioout : false
  216. diodevice: dio-1
  217. dioline : 0
  218. Analog input traces:
  219. trace-V-1 : true
  220. trace-EOD : true
  221. trace-LocalEOD-1 : true
  222. trace-GlobalEFieldStimulus: true
  223. Events:
  224. events-Spikes-1 : true
  225. events-EOD : true
  226. events-Chirps : true
  227. events-LocalEOD-1 : true
  228. events-LocalBeat-1-1 : true
  229. events-LocalBeat-1-2 : true
  230. events-GlobalEFieldStimulus: true
  231. *RePro: SetAttenuatorGain
  232. outrace : V-1
  233. gain : 1
  234. interactive: true
  235. *RePro: SetInputGain
  236. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  237. gainindex : 0
  238. interactive: true
  239. *RePro: SetOutput
  240. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  241. value : 0V
  242. intensity : 1
  243. interactive: false
  244. *RePro: Spectrogram
  245. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  246. width : 100ms
  247. step : 0ms
  248. tmax : 10s
  249. duration: 0s
  250. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  251. overlap : true
  252. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  253. powermax: true
  254. fmax : 2000Hz
  255. pmax : 0dB
  256. pmin : -50dB
  257. *RePro: TransferFunction
  258. Stimulus:
  259. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  260. offsetbase: [ custom, current ]
  261. offset : 0V
  262. amplitude : 1V
  263. clip : 4
  264. intensity : 1
  265. fmin : 0Hz
  266. fmax : 1000Hz
  267. duration : 1s
  268. pause : 1s
  269. repeats : 100
  270. Analysis:
  271. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  272. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  273. overlap : true
  274. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  275. plotstdevs : true
  276. plotcoherence: true
  277. plotdecibel : false
  278. *RePro: Wait
  279. absdate: false
  280. date : ~
  281. days : 0days
  282. time : "00:00:00.000"
  283. *RePro: BridgeTest
  284. amplitude : 1V
  285. duration : 10ms
  286. pause : 100ms
  287. average : 10
  288. skipspikes : true
  289. dynamicrange: false
  290. rate : 0.01
  291. plottrace : true
  292. *RePro: CalibrateSyncPulse
  293. imin : -1
  294. imax : 1
  295. istep : 0.001
  296. skipwin : 1000ms
  297. duration: 1000ms
  298. *RePro: CapacityCompensation
  299. amplitude : 1V
  300. duration : 200ms
  301. frequency : 100Hz
  302. showcycles : 10
  303. pause : 100ms
  304. average : 10
  305. skipspikes : true
  306. dynamicrange: false
  307. rate : 0.01
  308. *RePro: Iontophoresis
  309. durationpos : 1s
  310. amplitudepos : 1V
  311. pausepos : 1s
  312. durationneg : 1s
  313. amplitudeneg : 1V
  314. pauseneg : 1s
  315. fortunes : true
  316. fortuneperiod: 10s
  317. *RePro: SetLeak
  318. interactive : true
  319. preset : [ previous, zero, custom ]
  320. g : 0nS
  321. E : 0mV
  322. reversaltorest: true
  323. involtage : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  324. duration : 100ms
  325. *RePro: SetVGate
  326. interactive : true
  327. preset : [ previous, zero, custom ]
  328. g : 0nS
  329. E : 0mV
  330. vmid : 0mV
  331. width : 0mV
  332. tau : 10ms
  333. reversaltorest: true
  334. involtage : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  335. duration : 100ms
  336. *RePro: Beats
  337. Stimulation:
  338. duration : 10seconds
  339. pause : 20seconds
  340. ramp : 0.5seconds
  341. deltafrange : "10"
  342. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  343. fixeddf : false
  344. amplitude : 1mV/cm
  345. amtype : [ none, sine, rectangular ]
  346. amfreq : "1"
  347. amamplitude : "100"
  348. repeats : 10
  349. fakefish : 0Hz
  350. Chirps:
  351. generatechirps : false
  352. chirpsize : 100Hz
  353. chirpwidth : 100ms
  354. chirpampl : 0%
  355. chirpkurtosis : 1
  356. chirpfrequencies: ~
  357. chirptimesfile : ~
  358. chirptimeshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  359. Analysis:
  360. before : 1seconds
  361. after : 1seconds
  362. averagetime : 1seconds
  363. usepsd : true
  364. mineodfreq : 100Hz
  365. maxeodfreq : 2000Hz
  366. eodfreqprec : 1Hz
  367. neod : 2
  368. showstimulus: false
  369. split : false
  370. savetraces : false
  371. *RePro: CalibEField
  372. General:
  373. reset : false
  374. resetval : 0.1
  375. am : false
  376. beatfreq : 20Hz
  377. frequency: 600Hz
  378. duration : 600ms
  379. pause : 10ms
  380. Range:
  381. amplsel : [ contrast, amplitude ]
  382. targetcontrast : 20%
  383. mincontrast : 10%
  384. maxcontrast : 40%
  385. targetamplitude: 1mV/cm
  386. minamplitude : 0.5mV/cm
  387. maxamplitude : 2mV/cm
  388. numintensities : 10
  389. *RePro: JAR
  390. Stimulation:
  391. duration : 10seconds
  392. pause : 10seconds
  393. ramp : 0.5seconds
  394. deltafstep : 2Hz
  395. deltafmax : 12Hz
  396. deltafmin : -12Hz
  397. deltafrange : ~
  398. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  399. repeats : 200
  400. Amplitudes:
  401. amplsel : [ contrast, absolute ]
  402. contrastmax : 20%
  403. contrastmin : 10%
  404. contraststep: 20%
  405. amplmin : 1mV/cm
  406. amplmax : 2mV/cm
  407. amplstep : 1mV/cm
  408. S&timulus:
  409. genstim : true
  410. sinewave: true
  411. file : ~
  412. sigstdev: 1
  413. warpfile: false
  414. fakefish: 0Hz
  415. A&nalysis:
  416. before : 1seconds
  417. after : 8seconds
  418. savetraces : true
  419. jaraverage : 500ms
  420. chirpaverage: 20ms
  421. eodsavetime : 1000ms
  422. *RePro: LinearField
  423. duration: 1s
  424. *RePro: ManualJAR
  425. deltaf : 0.0Hz
  426. lineardeltaf : false
  427. deltaf2 : 0.0Hz
  428. amplitude : 1.0mV
  429. duration : 10seconds
  430. ramp : 0.5seconds
  431. fakefish : 0Hz
  432. showlineardeltaf: false
  433. before : 1seconds
  434. after : 1seconds
  435. averagetime : 1seconds
  436. split : false
  437. savetraces : false
  438. *RePro: BaselineActivity
  439. Timing:
  440. duration: 300ms
  441. repeats : 50
  442. Analysis:
  443. isimax : 20ms
  444. isistep : 0.2ms
  445. ratedt : 0.05ms
  446. ratetmax: 2ms
  447. Files:
  448. eodduration : 2000ms
  449. saveeodtrace: false
  450. saveeodtimes: false
  451. Control:
  452. auto : [ never, never, once, always ]
  453. adjust: false
  454. *RePro: Chirps
  455. Chirp parameter:
  456. nchirps : 10
  457. beatpos : 10
  458. beatstart : 0.25
  459. minspace : 200ms
  460. firstspace : 200ms
  461. chirpsize : 60Hz
  462. chirpwidth : 14ms
  463. chirpampl : 2%
  464. chirpsel : [ generated, from file ]
  465. chirpkurtosis: 1
  466. file : [ /home/efish/Desktop/doublePeakChirp.dat, ~, /home/efish/Desktop/doublePeakChirp.dat ]
  467. Beat parameter:
  468. deltaf : 200Hz
  469. contrast: 20%
  470. am : true
  471. sinewave: true
  472. playback: false
  473. pause : 1000ms
  474. repeats : 6
  475. Analysis:
  476. sigma : 2ms
  477. adjust: false
  478. *RePro: FICurve
  479. Test-Intensities:
  480. duration : 400ms
  481. maxintfac : 120%
  482. minintfac : 80%
  483. nints : 10
  484. repeats : 1
  485. blockrepeats : 10
  486. singlerepeats: 1
  487. intshuffle : [ AlternateOutUp, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  488. intincrement : -2
  489. Pre-Intensities:
  490. preduration : 0ms
  491. maxpreintfac : 140%
  492. minpreintfac : 60%
  493. npreints : 3
  494. preintshuffle: [ AlternateInDown, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  495. Control:
  496. am : false
  497. pause : 1000ms
  498. delay : 200ms
  499. onsettime : 50ms
  500. rangeintincrement: 4
  501. minrate : 40Hz
  502. minratefrac : 15%
  503. adjust : false
  504. *RePro: FileStimulus
  505. Stimulus:
  506. file : [ /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat, /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat, ~, /home/efish/stimuli/whitenoise/gwn50Hz50s0.3.dat ]
  507. sigstdev : 0.3
  508. duration : 5000ms
  509. pause : 1000ms
  510. amplsel : [ contrast, contrast, absolute ]
  511. contrast : 5%
  512. amplitude: 1mV/cm
  513. am : false
  514. repeats : 11
  515. Additional noise:
  516. noisetype : [ none, none, Gaussian-White, Ornstein-Uhlenbeck ]
  517. uppercutoff : 600Hz
  518. lowercutoff : 0Hz
  519. noisetau : 10ms
  520. noisecontrast: 2.5%
  521. noiseampl : 80mV/cm
  522. Analysis:
  523. binwidth: 5ms
  524. before : 0ms
  525. after : 0ms
  526. plotpsd : false
  527. psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  528. adjust : false
  529. *RePro: SAM
  530. Stimulus:
  531. duration : 10000ms
  532. pause : 100ms
  533. freqsel : [ relative to EOD, relative to EOD, absolute ]
  534. deltaf : 2Hz
  535. contrast : 20%
  536. repeats : 10
  537. am : true
  538. sinewave : true
  539. ampl : "0.0"
  540. phase : "0.0"
  541. contrastsel: [ fundamental, fundamental, peak amplitude ]
  542. Analysis:
  543. skip : 0.5Periods
  544. ratebins: 10
  545. before : 0ms
  546. after : 0ms
  547. adjust : false
  548. *Attenuator-0
  549. plugin : LinearAttenuate
  550. ident : Attenuator-0
  551. device : attdev-1
  552. line : 0
  553. aodevice : ao-1
  554. aochannel : 0
  555. intensityname : amplitude
  556. intensityunit : mV/cm
  557. intensityformat: %6.3f
  558. frequencyname : ~
  559. frequencyunit : Hz
  560. frequencyformat: %7.0f
  561. gain : 2.5813
  562. offset : 0
  563. *Attenuator-1
  564. plugin : LinearAttenuate
  565. ident : Attenuator-1
  566. device : attdev-1
  567. line : 1
  568. aodevice : ao-1
  569. aochannel : 1
  570. intensityname : amplitude
  571. intensityunit : mV/cm
  572. intensityformat: %6.3f
  573. frequencyname : ~
  574. frequencyunit : Hz
  575. frequencyformat: %7.0f
  576. gain : 0.072889
  577. offset : 0