relacsplugins.cfg 14 KB

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  1. *Metadata
  2. Recording:
  3. Recording quality: [ Good, good, poor, Poor, Fair, Good ]
  4. Comment : cell identity not entirely clear
  5. maybe a deep E-cell:
  6. Experimenter : [ Fabian Sinz, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Fabian Sinz, Fabian Sinz, Jan Grewe, Jan Benda ]
  7. WaterTemperature : 27°C
  8. WaterConductivity: 232uS/cm
  9. Cell:
  10. CellType (Cell type) : [ E-Cell, unknow, E-Cell, unkown, E-cell, E-cell superficial, I-Cell, P-unit, Ampullary, T-unit ]
  11. Structure (Recording location): [ Brain, Nerve, Brain ]
  12. BrainRegion : [ ELL, Torus, n.A., ELL ]
  13. BrainSubRegion : [ CLS, LS, CLS, CMS, MS ]
  14. Depth : -955um
  15. Lateral position : 1.5mm
  16. Transverse section : -5
  17. Subject:
  18. Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
  19. Gender (Sex): [ unknown, unknown, Male, Female ]
  20. Size : 15cm
  21. Weight : 7.9g
  22. Identifier : "2014lepto0046"
  23. -Preparation-:
  24. Type : [ in vivo, in vivo, slice ]
  25. Anaesthesia : true
  26. Anaesthetic (Drug) : MS 222
  27. AnaestheticDose (Concentration): 100mg/l
  28. LocalAnaesthesia : true
  29. LocalAnaesthetic (Drug) : Lidocaine
  30. Immobilization : true
  31. Immobilization (Drug) : Tubocurarin 5mg/L
  32. ImmobilizationDose : 75ul
  33. *Control: Session
  34. ephys: true
  35. *Control: AmplifierControl
  36. initmode : [ Bridge, Current-clamp, Voltage-clamp, Manual selection ]
  37. resistancescale : 1
  38. resistanceperiod: 50ms
  39. maxresistance : 100MOhm
  40. adjust : false
  41. buzzpulse : 750ms
  42. showbridge : true
  43. showcc : false
  44. showvc : false
  45. showmanual : false
  46. *Control: SpectrumAnalyzer
  47. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  48. origin : [ before end of data, before signal, after signal ]
  49. offset : 0ms
  50. duration: 1000ms
  51. size : [ "8192", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  52. overlap : true
  53. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  54. fmax : 500Hz
  55. decibel : true
  56. pmin : -50dB
  57. *Model: PUnitModel
  58. General:
  59. EOD:
  60. eodtype : [ Sine, None, Sine, Apteronotus, Eigenmannia ]
  61. eodfreq : 800Hz
  62. eodfreqsd : 10Hz
  63. eodfreqtau : 10000s
  64. eodlocalamplitude : 1mV/cm
  65. eodglobalamplitude: 1mV/cm
  66. localstimulusgain : 1.00
  67. globalstimulusgain: 0.00
  68. stimulusgain : 1.00
  69. Spikes:
  70. voltagescale: 0.5
  71. Spike generator:
  72. spikemodel: [ Wang-Buzsaki, Stimulus, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
  73. noised : 0
  74. deltat : 0.05ms
  75. integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
  76. Voltage-gated current 1 - activation only:
  77. gmc : 0
  78. emc : -90mV
  79. mvmc : -40mV
  80. mwmc : 10mV
  81. taumc: 10ms
  82. Voltage-gated current 2 - activation and inactivation:
  83. gmhc : 0
  84. emhc : -90mV
  85. mvmhc : -40mV
  86. mwmhc : 10mV
  87. taummhc: 10ms
  88. pmmhc : 1
  89. hvmhc : -40mV
  90. hwmhc : 10mV
  91. tauhmhc: 10ms
  92. pmhhc : 1
  93. *Model: Stimulus
  94. Input:
  95. gain : 1
  96. offset: 0muA/cm^2
  97. *Model: Morris-Lecar
  98. General:
  99. params: [ Custom, Type I, Type II ]
  100. Calcium current:
  101. gca : 4nS
  102. eca : 120mV
  103. mvca: -1.2mV
  104. mkca: 18mV
  105. Potassium current:
  106. gk : 8nS
  107. ek : -84mV
  108. mvk : 12mV
  109. mkk : 17.4mV
  110. mphik: 0.067kHz
  111. Leak current:
  112. gl: 2nS
  113. el: -60mV
  114. c : 20pF
  115. Input:
  116. timescale: 10
  117. gain : 1
  118. offset : 40muA/cm^2
  119. *Model: Hodgkin-Huxley
  120. Sodium current:
  121. gna: 120mS/cm^2
  122. ena: 50mV
  123. Potassium current:
  124. gk: 36mS/cm^2
  125. ek: -77mV
  126. Leak current:
  127. gl : 0.3mS/cm^2
  128. el : -54.4mV
  129. c : 1muF/cm^2
  130. phi: 1
  131. Input:
  132. gain : 1
  133. offset: 0muA/cm^2
  134. *Model: Connor
  135. Sodium current:
  136. gna: 120mS/cm^2
  137. ena: 50mV
  138. Potassium current:
  139. gk: 20mS/cm^2
  140. ek: -77mV
  141. A current:
  142. gka: 47mS/cm^2
  143. eka: -80mV
  144. Leak current:
  145. gl : 0.3mS/cm^2
  146. el : -22mV
  147. c : 1muF/cm^2
  148. phi: 1
  149. Input:
  150. gain : 1
  151. offset: 0muA/cm^2
  152. *Model: Wang-Buzsaki
  153. Sodium current:
  154. gna: 35mS/cm^2
  155. ena: 55mV
  156. Potassium current:
  157. gk: 9mS/cm^2
  158. ek: -90mV
  159. Leak current:
  160. gl : 0.1mS/cm^2
  161. el : -65mV
  162. c : 1muF/cm^2
  163. phi: 5
  164. Input:
  165. gain : 1
  166. offset: 0muA/cm^2
  167. *Event Detector: Spikes-1
  168. Detector:
  169. minthresh: 4.0mV
  170. decay : 1sec
  171. ratio : 5%
  172. testwidth: false
  173. maxwidth : 2.0ms
  174. Indicators:
  175. resolution : 0.10mV
  176. trendthresh: 10%
  177. trendtime : 2.0sec
  178. *Event Detector: EOD
  179. threshold : 0.44mV
  180. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  181. *Event Detector: Chirps
  182. minthresh: 10Hz
  183. *Event Detector: LocalEOD-1
  184. threshold : 0.78mV
  185. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  186. *Event Detector: LocalBeat-1
  187. minthresh: 0.134mV
  188. *Event Detector: GlobalEFieldStimulus
  189. threshold : 17.942mV
  190. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  191. *RePro: Pause
  192. duration: 1000ms
  193. repeats : 1
  194. savedata: false
  195. *RePro: Record
  196. duration: 1000ms
  197. repeats : 0
  198. *RePro: SaveTraces
  199. General:
  200. duration: 1000ms
  201. repeats : 0
  202. savedata: false
  203. split : false
  204. Analog input traces:
  205. trace-V-1 : true
  206. trace-EOD : true
  207. trace-LocalEOD-1 : true
  208. trace-GlobalEFieldStimulus: true
  209. Events:
  210. events-Spikes-1 : true
  211. events-EOD : true
  212. events-Chirps : true
  213. events-LocalEOD-1 : true
  214. events-LocalBeat-1-1 : true
  215. events-LocalBeat-1-2 : true
  216. events-GlobalEFieldStimulus: true
  217. *RePro: SetInputGain
  218. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  219. gainindex : 0
  220. interactive: true
  221. *RePro: SetOutput
  222. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  223. value : 0V
  224. interactive: false
  225. *RePro: Spectrogram
  226. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  227. width : 100ms
  228. step : 0ms
  229. tmax : 10s
  230. duration: 0s
  231. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  232. overlap : true
  233. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  234. powermax: true
  235. fmax : 2000Hz
  236. pmax : 0dB
  237. pmin : -50dB
  238. *RePro: TransferFunction
  239. Stimulus:
  240. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  241. offsetbase: [ custom, current ]
  242. offset : 0V
  243. amplitude : 1V
  244. intensity : 1
  245. fmax : 1000Hz
  246. duration : 1000ms
  247. pause : 1000ms
  248. repeats : 100
  249. Analysis:
  250. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  251. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  252. overlap : true
  253. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  254. plotstdevs : true
  255. plotcoherence: true
  256. *RePro: Wait
  257. absdate: false
  258. date : ~
  259. days : 0days
  260. time : "00:00:00.000"
  261. *RePro: BridgeTest
  262. amplitude: 1V
  263. duration : 10ms
  264. pause : 100ms
  265. average : 10
  266. plottrace: true
  267. *RePro: CapacityCompensation
  268. amplitude : 1V
  269. duration : 200ms
  270. frequency : 100Hz
  271. skipcycles: 10
  272. pause : 100ms
  273. *RePro: Iontophoresis
  274. durationpos : 1s
  275. amplitudepos : 1V
  276. pausepos : 1s
  277. durationneg : 1s
  278. amplitudeneg : 1V
  279. pauseneg : 1s
  280. fortunes : true
  281. fortuneperiod: 10s
  282. *RePro: Beats
  283. Stimulation:
  284. duration : 10seconds
  285. pause : 20seconds
  286. ramp : 0.5seconds
  287. deltafrange : "10"
  288. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  289. fixeddf : false
  290. amplitude : 1mV/cm
  291. repeats : 10
  292. fakefish : 0Hz
  293. Chirps:
  294. generatechirps : false
  295. chirpsize : 100Hz
  296. chirpwidth : 100ms
  297. chirpampl : 0%
  298. chirpkurtosis : 1
  299. chirpfrequencies: ~
  300. chirptimesfile : ~
  301. Analysis:
  302. before : 1seconds
  303. after : 1seconds
  304. averagetime : 1seconds
  305. showstimulus: false
  306. split : false
  307. savetraces : false
  308. *RePro: CalibEField
  309. General:
  310. reset : false
  311. resetval : 0.1
  312. am : false
  313. beatfreq : 20Hz
  314. frequency: 600Hz
  315. duration : 600ms
  316. pause : 10ms
  317. Range:
  318. amplsel : [ contrast, amplitude ]
  319. targetcontrast : 20%
  320. mincontrast : 10%
  321. maxcontrast : 40%
  322. targetamplitude: 1mV/cm
  323. minamplitude : 0.5mV/cm
  324. maxamplitude : 2mV/cm
  325. numintensities : 10
  326. *RePro: JAR
  327. Stimulation:
  328. duration : 10seconds
  329. pause : 10seconds
  330. ramp : 0.5seconds
  331. deltafstep : 2Hz
  332. deltafmax : 12Hz
  333. deltafmin : -12Hz
  334. deltafrange : ~
  335. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  336. repeats : 200
  337. Amplitudes:
  338. amplsel : [ contrast, absolute ]
  339. contrastmax : 20%
  340. contrastmin : 10%
  341. contraststep: 20%
  342. amplmin : 1mV/cm
  343. amplmax : 2mV/cm
  344. amplstep : 1mV/cm
  345. S&timulus:
  346. genstim : true
  347. sinewave: true
  348. file : ~
  349. sigstdev: 1
  350. warpfile: false
  351. fakefish: 0Hz
  352. A&nalysis:
  353. before : 1seconds
  354. after : 8seconds
  355. savetraces : true
  356. jaraverage : 500ms
  357. chirpaverage: 20ms
  358. eodsavetime : 1000ms
  359. *RePro: LinearField
  360. duration: 1s
  361. *RePro: ManualJAR
  362. duration : 10seconds
  363. ramp : 0.5seconds
  364. fakefish : 0Hz
  365. before : 1seconds
  366. after : 1seconds
  367. averagetime: 1seconds
  368. split : false
  369. savetraces : false
  370. *RePro: BaselineActivity
  371. Timing:
  372. duration: 300ms
  373. repeats : 0
  374. Analysis:
  375. isimax : 20ms
  376. isistep : 0.2ms
  377. ratedt : 0.05ms
  378. ratetmax: 2ms
  379. Files:
  380. eodduration : 2000ms
  381. saveeodtrace: false
  382. saveeodtimes: false
  383. Control:
  384. auto : [ never, once, always ]
  385. adjust: false
  386. *RePro: Chirps
  387. Chirp parameter:
  388. nchirps : 10
  389. beatpos : 10
  390. beatstart : 0.25
  391. minspace : 200ms
  392. firstspace : 200ms
  393. chirpsize : 60Hz
  394. chirpwidth : 14ms
  395. chirpampl : 2%
  396. chirpsel : [ generated, from file ]
  397. chirpkurtosis: 1
  398. file : [ /home/efish/Desktop/doublePeakChirp.dat, ~, /home/efish/Desktop/doublePeakChirp.dat ]
  399. Beat parameter:
  400. deltaf : 200Hz
  401. contrast: 20%
  402. am : true
  403. sinewave: true
  404. playback: false
  405. pause : 1000ms
  406. repeats : 6
  407. Analysis:
  408. sigma : 2ms
  409. adjust: false
  410. *RePro: FICurve
  411. Test-Intensities:
  412. duration : 400ms
  413. maxintfac : 120%
  414. minintfac : 80%
  415. nints : 16
  416. repeats : 1
  417. blockrepeats : 10
  418. singlerepeats: 1
  419. intshuffle : [ AlternateOutUp, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  420. intincrement : -2
  421. Pre-Intensities:
  422. preduration : 0ms
  423. maxpreintfac : 140%
  424. minpreintfac : 60%
  425. npreints : 3
  426. preintshuffle: [ AlternateInDown, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  427. Control:
  428. am : true
  429. pause : 1000ms
  430. delay : 200ms
  431. onsettime : 50ms
  432. rangeintincrement: 4
  433. minrate : 40Hz
  434. minratefrac : 15%
  435. adjust : false
  436. *RePro: FileStimulus
  437. Stimulus:
  438. file : [ /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat, ~, /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat ]
  439. sigstdev : 0.3
  440. duration : 10000ms
  441. pause : 1000ms
  442. amplsel : [ contrast, absolute ]
  443. contrast : 10%
  444. amplitude: 1mV/cm
  445. am : true
  446. repeats : 22
  447. Additional noise:
  448. noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
  449. uppercutoff : 600Hz
  450. lowercutoff : 0Hz
  451. noisetau : 10ms
  452. noisecontrast: 5%
  453. noiseampl : 80mV/cm
  454. Analysis:
  455. binwidth: 5ms
  456. before : 0ms
  457. after : 0ms
  458. plotpsd : false
  459. psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  460. adjust : false
  461. *RePro: SAM
  462. Stimulus:
  463. duration: 400ms
  464. pause : 100ms
  465. freqsel : [ absolute, relative to EOD, absolute ]
  466. deltaf : 20Hz
  467. contrast: 10%
  468. repeats : 0
  469. am : false
  470. sinewave: true
  471. Analysis:
  472. skip : 0.5Periods
  473. ratebins: 10
  474. before : 0ms
  475. after : 0ms
  476. adjust : false
  477. *Attenuator-0
  478. gain : 2.234
  479. offset: 0
  480. *Attenuator-1
  481. gain : 0.078363
  482. offset: 0