relacsplugins.cfg 13 KB

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  1. *Metadata
  2. Recording:
  3. Recording quality: [ Fair, good, poor, Poor, Fair, Good ]
  4. Comment : ~
  5. Experimenter : [ Fabian Sinz, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Fabian Sinz, Fabian Sinz, Jan Grewe, Jan Benda ]
  6. WaterTemperature : 27°C
  7. WaterConductivity: 232uS/cm
  8. Cell:
  9. CellType (Cell type) : [ P-unit, unknow, E-Cell, unkown, E-cell, E-cell superficial, I-Cell, P-unit, Ampullary, T-unit ]
  10. Structure (Recording location): [ Brain, Nerve, Brain ]
  11. BrainRegion : [ ELL, Torus, n.A., ELL ]
  12. BrainSubRegion : [ CLS, LS, CLS, CMS, MS ]
  13. Depth : -827um
  14. Lateral position : 1.5mm
  15. Transverse section : -5
  16. Subject:
  17. Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
  18. Gender (Sex): [ unknown, unknown, Male, Female ]
  19. Size : 15cm
  20. Weight : 7.9g
  21. Identifier : "2014lepto0046"
  22. -Preparation-:
  23. Type : [ in vivo, in vivo, slice ]
  24. Anaesthesia : true
  25. Anaesthetic (Drug) : MS 222
  26. AnaestheticDose (Concentration): 100mg/l
  27. LocalAnaesthesia : true
  28. LocalAnaesthetic (Drug) : Lidocaine
  29. Immobilization : true
  30. Immobilization (Drug) : Tubocurarin 5mg/L
  31. ImmobilizationDose : 75ul
  32. *Control: Session
  33. ephys: true
  34. *Control: AmplifierControl
  35. initmode : [ Bridge, Current-clamp, Voltage-clamp, Manual selection ]
  36. resistancescale : 1
  37. resistanceperiod: 50ms
  38. maxresistance : 100MOhm
  39. adjust : false
  40. buzzpulse : 750ms
  41. showbridge : true
  42. showcc : false
  43. showvc : false
  44. showmanual : false
  45. *Control: SpectrumAnalyzer
  46. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  47. origin : [ before end of data, before signal, after signal ]
  48. offset : 0ms
  49. duration: 1000ms
  50. size : [ "8192", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  51. overlap : true
  52. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  53. fmax : 500Hz
  54. decibel : true
  55. pmin : -50dB
  56. *Model: PUnitModel
  57. General:
  58. EOD:
  59. eodtype : [ Sine, None, Sine, Apteronotus, Eigenmannia ]
  60. eodfreq : 800Hz
  61. eodfreqsd : 10Hz
  62. eodfreqtau : 10000s
  63. eodlocalamplitude : 1mV/cm
  64. eodglobalamplitude: 1mV/cm
  65. localstimulusgain : 1.00
  66. globalstimulusgain: 0.00
  67. stimulusgain : 1.00
  68. Spikes:
  69. voltagescale: 0.5
  70. Spike generator:
  71. spikemodel: [ Wang-Buzsaki, Stimulus, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
  72. noised : 0
  73. deltat : 0.05ms
  74. integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
  75. Voltage-gated current 1 - activation only:
  76. gmc : 0
  77. emc : -90mV
  78. mvmc : -40mV
  79. mwmc : 10mV
  80. taumc: 10ms
  81. Voltage-gated current 2 - activation and inactivation:
  82. gmhc : 0
  83. emhc : -90mV
  84. mvmhc : -40mV
  85. mwmhc : 10mV
  86. taummhc: 10ms
  87. pmmhc : 1
  88. hvmhc : -40mV
  89. hwmhc : 10mV
  90. tauhmhc: 10ms
  91. pmhhc : 1
  92. *Model: Stimulus
  93. Input:
  94. gain : 1
  95. offset: 0muA/cm^2
  96. *Model: Morris-Lecar
  97. General:
  98. params: [ Custom, Type I, Type II ]
  99. Calcium current:
  100. gca : 4nS
  101. eca : 120mV
  102. mvca: -1.2mV
  103. mkca: 18mV
  104. Potassium current:
  105. gk : 8nS
  106. ek : -84mV
  107. mvk : 12mV
  108. mkk : 17.4mV
  109. mphik: 0.067kHz
  110. Leak current:
  111. gl: 2nS
  112. el: -60mV
  113. c : 20pF
  114. Input:
  115. timescale: 10
  116. gain : 1
  117. offset : 40muA/cm^2
  118. *Model: Hodgkin-Huxley
  119. Sodium current:
  120. gna: 120mS/cm^2
  121. ena: 50mV
  122. Potassium current:
  123. gk: 36mS/cm^2
  124. ek: -77mV
  125. Leak current:
  126. gl : 0.3mS/cm^2
  127. el : -54.4mV
  128. c : 1muF/cm^2
  129. phi: 1
  130. Input:
  131. gain : 1
  132. offset: 0muA/cm^2
  133. *Model: Connor
  134. Sodium current:
  135. gna: 120mS/cm^2
  136. ena: 50mV
  137. Potassium current:
  138. gk: 20mS/cm^2
  139. ek: -77mV
  140. A current:
  141. gka: 47mS/cm^2
  142. eka: -80mV
  143. Leak current:
  144. gl : 0.3mS/cm^2
  145. el : -22mV
  146. c : 1muF/cm^2
  147. phi: 1
  148. Input:
  149. gain : 1
  150. offset: 0muA/cm^2
  151. *Model: Wang-Buzsaki
  152. Sodium current:
  153. gna: 35mS/cm^2
  154. ena: 55mV
  155. Potassium current:
  156. gk: 9mS/cm^2
  157. ek: -90mV
  158. Leak current:
  159. gl : 0.1mS/cm^2
  160. el : -65mV
  161. c : 1muF/cm^2
  162. phi: 5
  163. Input:
  164. gain : 1
  165. offset: 0muA/cm^2
  166. *Event Detector: Spikes-1
  167. Detector:
  168. minthresh: 3.0mV
  169. decay : 1sec
  170. ratio : 5%
  171. testwidth: false
  172. maxwidth : 2.0ms
  173. Indicators:
  174. resolution : 0.10mV
  175. trendthresh: 10%
  176. trendtime : 2.0sec
  177. *Event Detector: EOD
  178. threshold : 0.44mV
  179. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  180. *Event Detector: Chirps
  181. minthresh: 10Hz
  182. *Event Detector: LocalEOD-1
  183. threshold : 0.78mV
  184. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  185. *Event Detector: LocalBeat-1
  186. minthresh: 0.200mV
  187. *Event Detector: GlobalEFieldStimulus
  188. threshold : 11.426mV
  189. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  190. *RePro: Pause
  191. duration: 1000ms
  192. repeats : 1
  193. savedata: false
  194. *RePro: Record
  195. duration: 1000ms
  196. repeats : 0
  197. *RePro: SaveTraces
  198. General:
  199. duration: 1000ms
  200. repeats : 0
  201. savedata: false
  202. split : false
  203. Analog input traces:
  204. trace-V-1 : true
  205. trace-EOD : true
  206. trace-LocalEOD-1 : true
  207. trace-GlobalEFieldStimulus: true
  208. Events:
  209. events-Spikes-1 : true
  210. events-EOD : true
  211. events-Chirps : true
  212. events-LocalEOD-1 : true
  213. events-LocalBeat-1-1 : true
  214. events-LocalBeat-1-2 : true
  215. events-GlobalEFieldStimulus: true
  216. *RePro: SetInputGain
  217. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  218. gainindex : 0
  219. interactive: true
  220. *RePro: SetOutput
  221. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  222. value : 0V
  223. interactive: false
  224. *RePro: Spectrogram
  225. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  226. width : 100ms
  227. step : 0ms
  228. tmax : 10s
  229. duration: 0s
  230. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  231. overlap : true
  232. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  233. powermax: true
  234. fmax : 2000Hz
  235. pmax : 0dB
  236. pmin : -50dB
  237. *RePro: TransferFunction
  238. Stimulus:
  239. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  240. offsetbase: [ custom, current ]
  241. offset : 0V
  242. amplitude : 1V
  243. intensity : 1
  244. fmax : 1000Hz
  245. duration : 1000ms
  246. pause : 1000ms
  247. repeats : 100
  248. Analysis:
  249. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  250. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  251. overlap : true
  252. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  253. plotstdevs : true
  254. plotcoherence: true
  255. *RePro: Wait
  256. absdate: false
  257. date : ~
  258. days : 0days
  259. time : "00:00:00.000"
  260. *RePro: BridgeTest
  261. amplitude: 1V
  262. duration : 10ms
  263. pause : 100ms
  264. average : 10
  265. plottrace: true
  266. *RePro: CapacityCompensation
  267. amplitude : 1V
  268. duration : 200ms
  269. frequency : 100Hz
  270. skipcycles: 10
  271. pause : 100ms
  272. *RePro: Iontophoresis
  273. durationpos : 1s
  274. amplitudepos : 1V
  275. pausepos : 1s
  276. durationneg : 1s
  277. amplitudeneg : 1V
  278. pauseneg : 1s
  279. fortunes : true
  280. fortuneperiod: 10s
  281. *RePro: Beats
  282. Stimulation:
  283. duration : 10seconds
  284. pause : 20seconds
  285. ramp : 0.5seconds
  286. deltafrange : "10"
  287. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  288. fixeddf : false
  289. amplitude : 1mV/cm
  290. repeats : 10
  291. fakefish : 0Hz
  292. Chirps:
  293. generatechirps : false
  294. chirpsize : 100Hz
  295. chirpwidth : 100ms
  296. chirpampl : 0%
  297. chirpkurtosis : 1
  298. chirpfrequencies: ~
  299. chirptimesfile : ~
  300. Analysis:
  301. before : 1seconds
  302. after : 1seconds
  303. averagetime : 1seconds
  304. showstimulus: false
  305. split : false
  306. savetraces : false
  307. *RePro: CalibEField
  308. General:
  309. reset : false
  310. resetval : 0.1
  311. am : false
  312. beatfreq : 20Hz
  313. frequency: 600Hz
  314. duration : 600ms
  315. pause : 10ms
  316. Range:
  317. amplsel : [ contrast, amplitude ]
  318. targetcontrast : 20%
  319. mincontrast : 10%
  320. maxcontrast : 40%
  321. targetamplitude: 1mV/cm
  322. minamplitude : 0.5mV/cm
  323. maxamplitude : 2mV/cm
  324. numintensities : 10
  325. *RePro: JAR
  326. Stimulation:
  327. duration : 10seconds
  328. pause : 10seconds
  329. ramp : 0.5seconds
  330. deltafstep : 2Hz
  331. deltafmax : 12Hz
  332. deltafmin : -12Hz
  333. deltafrange : ~
  334. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  335. repeats : 200
  336. Amplitudes:
  337. amplsel : [ contrast, absolute ]
  338. contrastmax : 20%
  339. contrastmin : 10%
  340. contraststep: 20%
  341. amplmin : 1mV/cm
  342. amplmax : 2mV/cm
  343. amplstep : 1mV/cm
  344. S&timulus:
  345. genstim : true
  346. sinewave: true
  347. file : ~
  348. sigstdev: 1
  349. warpfile: false
  350. fakefish: 0Hz
  351. A&nalysis:
  352. before : 1seconds
  353. after : 8seconds
  354. savetraces : true
  355. jaraverage : 500ms
  356. chirpaverage: 20ms
  357. eodsavetime : 1000ms
  358. *RePro: LinearField
  359. duration: 1s
  360. *RePro: ManualJAR
  361. duration : 10seconds
  362. ramp : 0.5seconds
  363. fakefish : 0Hz
  364. before : 1seconds
  365. after : 1seconds
  366. averagetime: 1seconds
  367. split : false
  368. savetraces : false
  369. *RePro: BaselineActivity
  370. Timing:
  371. duration: 300ms
  372. repeats : 0
  373. Analysis:
  374. isimax : 20ms
  375. isistep : 0.2ms
  376. ratedt : 0.05ms
  377. ratetmax: 2ms
  378. Files:
  379. eodduration : 2000ms
  380. saveeodtrace: false
  381. saveeodtimes: false
  382. Control:
  383. auto : [ never, once, always ]
  384. adjust: false
  385. *RePro: Chirps
  386. Chirp parameter:
  387. nchirps : 10
  388. beatpos : 10
  389. beatstart : 0.25
  390. minspace : 200ms
  391. firstspace : 200ms
  392. chirpsize : 60Hz
  393. chirpwidth : 14ms
  394. chirpampl : 2%
  395. chirpsel : [ generated, from file ]
  396. chirpkurtosis: 1
  397. file : [ /home/efish/Desktop/doublePeakChirp.dat, ~, /home/efish/Desktop/doublePeakChirp.dat ]
  398. Beat parameter:
  399. deltaf : 200Hz
  400. contrast: 20%
  401. am : true
  402. sinewave: true
  403. playback: false
  404. pause : 1000ms
  405. repeats : 6
  406. Analysis:
  407. sigma : 2ms
  408. adjust: false
  409. *RePro: FICurve
  410. Test-Intensities:
  411. duration : 400ms
  412. maxintfac : 120%
  413. minintfac : 80%
  414. nints : 16
  415. repeats : 1
  416. blockrepeats : 10
  417. singlerepeats: 1
  418. intshuffle : [ AlternateOutUp, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  419. intincrement : -2
  420. Pre-Intensities:
  421. preduration : 0ms
  422. maxpreintfac : 140%
  423. minpreintfac : 60%
  424. npreints : 3
  425. preintshuffle: [ AlternateInDown, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  426. Control:
  427. am : true
  428. pause : 1000ms
  429. delay : 200ms
  430. onsettime : 50ms
  431. rangeintincrement: 4
  432. minrate : 40Hz
  433. minratefrac : 15%
  434. adjust : false
  435. *RePro: FileStimulus
  436. Stimulus:
  437. file : [ /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat, ~, /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat ]
  438. sigstdev : 0.3
  439. duration : 10000ms
  440. pause : 1000ms
  441. amplsel : [ contrast, absolute ]
  442. contrast : 10%
  443. amplitude: 1mV/cm
  444. am : true
  445. repeats : 22
  446. Additional noise:
  447. noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
  448. uppercutoff : 600Hz
  449. lowercutoff : 0Hz
  450. noisetau : 10ms
  451. noisecontrast: 5%
  452. noiseampl : 80mV/cm
  453. Analysis:
  454. binwidth: 5ms
  455. before : 0ms
  456. after : 0ms
  457. plotpsd : false
  458. psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  459. adjust : false
  460. *RePro: SAM
  461. Stimulus:
  462. duration: 400ms
  463. pause : 100ms
  464. freqsel : [ absolute, relative to EOD, absolute ]
  465. deltaf : 20Hz
  466. contrast: 10%
  467. repeats : 0
  468. am : false
  469. sinewave: true
  470. Analysis:
  471. skip : 0.5Periods
  472. ratebins: 10
  473. before : 0ms
  474. after : 0ms
  475. adjust : false
  476. *Attenuator-0
  477. gain : 3.5571
  478. offset: 0
  479. *Attenuator-1
  480. gain : 0.083765
  481. offset: 0