relacsplugins.cfg 13 KB

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  1. *Metadata
  2. Recording:
  3. Recording quality: [ Good, Poor, Fair, Good ]
  4. Comment : ~
  5. Experimenter : [ Jan Grewe, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Fabian Sinz, Fabian Sinz, Jan Grewe, Jan Benda ]
  6. WaterTemperature : 27.1°C
  7. WaterConductivity: 232uS/cm
  8. Cell:
  9. CellType (Cell type) : [ E-cell, E-Cell, unkown, E-cell, E-cell superficial, I-Cell, P-unit, Ampullary, T-unit ]
  10. Structure (Recording location): [ Brain, Nerve, Brain ]
  11. BrainRegion : [ ELL, Torus, n.A., ELL ]
  12. BrainSubRegion : [ CLS, LS, CLS, CMS, MS ]
  13. Depth : -856um
  14. Lateral position : 1.5mm
  15. Transverse section : -8
  16. Subject:
  17. Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
  18. Gender (Sex): [ unknown, unknown, Male, Female ]
  19. Size : 16cm
  20. Weight : 10.8g
  21. Identifier : "2013lepto0017"
  22. -Preparation-:
  23. Type : [ in vivo, in vivo, slice ]
  24. Anaesthesia : true
  25. Anaesthetic (Drug) : MS 222
  26. AnaestheticDose (Concentration): 125mg/l
  27. LocalAnaesthesia : true
  28. LocalAnaesthetic (Drug) : Lidocaine
  29. Immobilization : true
  30. Immobilization (Drug) : Tubocurarin 5mg/L
  31. ImmobilizationDose : 75ul
  32. *Control: Session
  33. ephys: true
  34. *Control: AmplifierControl
  35. initmode : [ Bridge, Current-clamp, Voltage-clamp, Manual selection ]
  36. resistancescale: 1
  37. maxresistance : 100MOhm
  38. buzzpulse : 750ms
  39. adjust : false
  40. *Control: SpectrumAnalyzer
  41. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  42. origin : [ before end of data, before signal, after signal ]
  43. offset : 0ms
  44. duration: 1000ms
  45. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  46. overlap : true
  47. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  48. fmax : 500Hz
  49. decibel : true
  50. pmin : -50dB
  51. *Model: PUnitModel
  52. General:
  53. EOD:
  54. eodtype : [ Sine, None, Sine, Apteronotus, Eigenmannia ]
  55. eodfreq : 800Hz
  56. eodfreqsd : 10Hz
  57. eodfreqtau : 10000s
  58. eodlocalamplitude : 1mV/cm
  59. eodglobalamplitude: 1mV/cm
  60. localstimulusgain : 1.00
  61. globalstimulusgain: 0.00
  62. stimulusgain : 1.00
  63. Spikes:
  64. voltagescale: 0.5
  65. Spike generator:
  66. spikemodel: [ Wang-Buzsaki, Stimulus, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
  67. noised : 0
  68. deltat : 0.05ms
  69. integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
  70. Voltage-gated current 1 - activation only:
  71. gmc : 0
  72. emc : -90mV
  73. mvmc : -40mV
  74. mwmc : 10mV
  75. taumc: 10ms
  76. Voltage-gated current 2 - activation and inactivation:
  77. gmhc : 0
  78. emhc : -90mV
  79. mvmhc : -40mV
  80. mwmhc : 10mV
  81. taummhc: 10ms
  82. pmmhc : 1
  83. hvmhc : -40mV
  84. hwmhc : 10mV
  85. tauhmhc: 10ms
  86. pmhhc : 1
  87. *Model: Stimulus
  88. Input:
  89. gain : 1
  90. offset: 0muA/cm^2
  91. *Model: Morris-Lecar
  92. General:
  93. params: [ Custom, Type I, Type II ]
  94. Calcium current:
  95. gca : 4nS
  96. eca : 120mV
  97. mvca: -1.2mV
  98. mkca: 18mV
  99. Potassium current:
  100. gk : 8nS
  101. ek : -84mV
  102. mvk : 12mV
  103. mkk : 17.4mV
  104. mphik: 0.067kHz
  105. Leak current:
  106. gl: 2nS
  107. el: -60mV
  108. c : 20pF
  109. Input:
  110. timescale: 10
  111. gain : 1
  112. offset : 40muA/cm^2
  113. *Model: Hodgkin-Huxley
  114. Sodium current:
  115. gna: 120mS/cm^2
  116. ena: 50mV
  117. Potassium current:
  118. gk: 36mS/cm^2
  119. ek: -77mV
  120. Leak current:
  121. gl : 0.3mS/cm^2
  122. el : -54.4mV
  123. c : 1muF/cm^2
  124. phi: 1
  125. Input:
  126. gain : 1
  127. offset: 0muA/cm^2
  128. *Model: Connor
  129. Sodium current:
  130. gna: 120mS/cm^2
  131. ena: 50mV
  132. Potassium current:
  133. gk: 20mS/cm^2
  134. ek: -77mV
  135. A current:
  136. gka: 47mS/cm^2
  137. eka: -80mV
  138. Leak current:
  139. gl : 0.3mS/cm^2
  140. el : -22mV
  141. c : 1muF/cm^2
  142. phi: 1
  143. Input:
  144. gain : 1
  145. offset: 0muA/cm^2
  146. *Model: Wang-Buzsaki
  147. Sodium current:
  148. gna: 35mS/cm^2
  149. ena: 55mV
  150. Potassium current:
  151. gk: 9mS/cm^2
  152. ek: -90mV
  153. Leak current:
  154. gl : 0.1mS/cm^2
  155. el : -65mV
  156. c : 1muF/cm^2
  157. phi: 5
  158. Input:
  159. gain : 1
  160. offset: 0muA/cm^2
  161. *Event Detector: Spikes-1
  162. Detector:
  163. minthresh: 4.5mV
  164. decay : 1sec
  165. ratio : 5%
  166. testwidth: false
  167. maxwidth : 2.0ms
  168. Indicators:
  169. resolution : 0.10mV
  170. trendthresh: 10%
  171. trendtime : 2.0sec
  172. *Event Detector: EOD
  173. threshold : 0.47mV
  174. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  175. *Event Detector: Chirps
  176. minthresh: 10Hz
  177. *Event Detector: LocalEOD-1
  178. threshold : 0.5mV
  179. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  180. *Event Detector: LocalBeat-1
  181. minthresh: 0.100mV
  182. *Event Detector: GlobalEFieldStimulus
  183. threshold : 11.142mV
  184. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  185. *RePro: Pause
  186. duration: 1000ms
  187. repeats : 1
  188. savedata: false
  189. *RePro: Record
  190. duration: 1000ms
  191. repeats : 0
  192. *RePro: SaveTraces
  193. General:
  194. duration: 1000ms
  195. repeats : 0
  196. savedata: false
  197. split : false
  198. Analog input traces:
  199. trace-V-1 : true
  200. trace-EOD : true
  201. trace-LocalEOD-1 : true
  202. trace-GlobalEFieldStimulus: true
  203. Events:
  204. events-Spikes-1 : true
  205. events-EOD : true
  206. events-Chirps : true
  207. events-LocalEOD-1 : true
  208. events-LocalBeat-1-1 : true
  209. events-LocalBeat-1-2 : true
  210. events-GlobalEFieldStimulus: true
  211. *RePro: SetInputGain
  212. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  213. gainindex : 0
  214. interactive: true
  215. *RePro: SetOutput
  216. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  217. value : 0V
  218. interactive: false
  219. *RePro: Spectrogram
  220. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  221. width : 100ms
  222. step : 0ms
  223. tmax : 10s
  224. duration: 0s
  225. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  226. overlap : true
  227. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  228. powermax: true
  229. fmax : 2000Hz
  230. pmax : 0dB
  231. pmin : -50dB
  232. *RePro: TransferFunction
  233. Stimulus:
  234. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  235. offsetbase: [ custom, current ]
  236. offset : 0V
  237. amplitude : 1V
  238. intensity : 1
  239. fmax : 1000Hz
  240. duration : 1000ms
  241. pause : 1000ms
  242. repeats : 100
  243. Analysis:
  244. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  245. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  246. overlap : true
  247. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  248. plotstdevs : true
  249. plotcoherence: true
  250. *RePro: Wait
  251. absdate: false
  252. date : ~
  253. days : 0days
  254. time : "00:00:00.000"
  255. *RePro: BridgeTest
  256. amplitude: 1V
  257. duration : 10ms
  258. pause : 100ms
  259. *RePro: CapacityCompensation
  260. amplitude : 1V
  261. duration : 200ms
  262. frequency : 100Hz
  263. skipcycles: 10
  264. pause : 100ms
  265. *RePro: Beats
  266. Stimulation:
  267. duration : 10seconds
  268. pause : 20seconds
  269. ramp : 0.5seconds
  270. deltafrange : "10"
  271. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  272. fixeddf : false
  273. amplitude : 1mV/cm
  274. repeats : 10
  275. fakefish : 0Hz
  276. Chirps:
  277. generatechirps : false
  278. chirpsize : 100Hz
  279. chirpwidth : 100ms
  280. chirpampl : 0%
  281. chirpkurtosis : 1
  282. chirpfrequencies: ~
  283. chirptimesfile : ~
  284. Analysis:
  285. before : 1seconds
  286. after : 1seconds
  287. averagetime : 1seconds
  288. showstimulus: false
  289. split : false
  290. savetraces : false
  291. *RePro: CalibEField
  292. General:
  293. reset : false
  294. resetval : 0.1
  295. am : false
  296. beatfreq : 20Hz
  297. frequency: 600Hz
  298. duration : 600ms
  299. pause : 10ms
  300. Range:
  301. amplsel : [ contrast, amplitude ]
  302. targetcontrast : 20%
  303. mincontrast : 10%
  304. maxcontrast : 40%
  305. targetamplitude: 1mV/cm
  306. minamplitude : 0.5mV/cm
  307. maxamplitude : 2mV/cm
  308. numintensities : 10
  309. *RePro: JAR
  310. Stimulation:
  311. duration : 10seconds
  312. pause : 10seconds
  313. ramp : 0.5seconds
  314. deltafstep : 2Hz
  315. deltafmax : 12Hz
  316. deltafmin : -12Hz
  317. deltafrange : ~
  318. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  319. repeats : 200
  320. Amplitudes:
  321. amplsel : [ contrast, absolute ]
  322. contrastmax : 20%
  323. contrastmin : 10%
  324. contraststep: 20%
  325. amplmin : 1mV/cm
  326. amplmax : 2mV/cm
  327. amplstep : 1mV/cm
  328. S&timulus:
  329. genstim : true
  330. sinewave: true
  331. file : ~
  332. sigstdev: 1
  333. warpfile: false
  334. fakefish: 0Hz
  335. A&nalysis:
  336. before : 1seconds
  337. after : 8seconds
  338. savetraces : true
  339. jaraverage : 500ms
  340. chirpaverage: 20ms
  341. eodsavetime : 1000ms
  342. *RePro: LinearField
  343. duration: 1s
  344. *RePro: ManualJAR
  345. duration : 10seconds
  346. ramp : 0.5seconds
  347. fakefish : 0Hz
  348. before : 1seconds
  349. after : 1seconds
  350. averagetime: 1seconds
  351. split : false
  352. savetraces : false
  353. *RePro: BaselineActivity
  354. Timing:
  355. duration: 300ms
  356. repeats : 0
  357. Analysis:
  358. isimax : 20ms
  359. isistep : 0.2ms
  360. ratedt : 0.05ms
  361. ratetmax: 2ms
  362. Files:
  363. eodduration : 2000ms
  364. saveeodtrace: false
  365. saveeodtimes: false
  366. Control:
  367. auto : [ never, once, always ]
  368. adjust: false
  369. *RePro: Chirps
  370. Chirp parameter:
  371. nchirps : 10
  372. beatpos : 10
  373. beatstart : 0.25
  374. minspace : 200ms
  375. firstspace : 200ms
  376. chirpsize : 60Hz
  377. chirpwidth : 14ms
  378. chirpampl : 2%
  379. chirpsel : [ generated, from file ]
  380. chirpkurtosis: 1
  381. file : [ /home/efish/Desktop/doublePeakChirp.dat, ~, /home/efish/Desktop/doublePeakChirp.dat ]
  382. Beat parameter:
  383. deltaf : 200Hz
  384. contrast: 20%
  385. am : true
  386. sinewave: true
  387. playback: false
  388. pause : 1000ms
  389. repeats : 6
  390. Analysis:
  391. sigma : 2ms
  392. adjust: false
  393. *RePro: FICurve
  394. Test-Intensities:
  395. duration : 400ms
  396. maxintfac : 120%
  397. minintfac : 80%
  398. nints : 16
  399. repeats : 1
  400. blockrepeats : 10
  401. singlerepeats: 1
  402. intshuffle : [ AlternateOutUp, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  403. intincrement : -2
  404. Pre-Intensities:
  405. preduration : 0ms
  406. maxpreintfac : 140%
  407. minpreintfac : 60%
  408. npreints : 3
  409. preintshuffle: [ AlternateInDown, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  410. Control:
  411. am : true
  412. pause : 1000ms
  413. delay : 200ms
  414. onsettime : 50ms
  415. rangeintincrement: 4
  416. minrate : 40Hz
  417. minratefrac : 15%
  418. adjust : false
  419. *RePro: FileStimulus
  420. Stimulus:
  421. file : [ /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat, ~, /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat ]
  422. sigstdev : 0.3
  423. duration : 10000ms
  424. pause : 1000ms
  425. amplsel : [ contrast, absolute ]
  426. contrast : 10%
  427. amplitude: 1mV/cm
  428. am : true
  429. repeats : 22
  430. Additional noise:
  431. noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
  432. uppercutoff : 600Hz
  433. lowercutoff : 0Hz
  434. noisetau : 10ms
  435. noisecontrast: 5%
  436. noiseampl : 80mV/cm
  437. Analysis:
  438. binwidth: 5ms
  439. before : 0ms
  440. after : 0ms
  441. plotpsd : false
  442. psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  443. adjust : false
  444. *RePro: SAM
  445. Stimulus:
  446. duration: 400ms
  447. pause : 100ms
  448. freqsel : [ absolute, relative to EOD, absolute ]
  449. deltaf : 20Hz
  450. contrast: 10%
  451. repeats : 0
  452. am : false
  453. sinewave: true
  454. Analysis:
  455. skip : 0.5Periods
  456. ratebins: 10
  457. before : 0ms
  458. after : 0ms
  459. adjust : false
  460. *Attenuator-0
  461. gain : 1.0834
  462. offset: 0
  463. *Attenuator-1
  464. gain : 0.075922
  465. offset: 0