relacsplugins.cfg 13 KB

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  1. *Metadata
  2. Recording:
  3. Recording quality: [ Fair, Poor, Fair, Good ]
  4. Comment : ~
  5. Experimenter : [ Jie Zhang, Jie Zhang, Jan Grewe, Fabian Sinz, Fabian Sinz, Jan Grewe, Jan Benda ]
  6. WaterTemperature : 27.1°C
  7. WaterConductivity: 232uS/cm
  8. Cell:
  9. CellType (Cell type) : [ Ampullary, P-unit, Ampullary, T-unit ]
  10. Structure (Recording location): [ Nerve, Nerve, ELL ]
  11. Depth : -322um
  12. Subject:
  13. Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
  14. Gender (Sex): [ unknown, unknown, Male, Female ]
  15. Size : 16cm
  16. Weight : 14g
  17. Identifier : "2013lepto0006"
  18. Preparation:
  19. Type : [ in vivo, in vivo, slice ]
  20. Anaesthesia : true
  21. Anaesthetic (Drug) : MS 222
  22. AnaestheticDose (Concentration): 125mg/l
  23. LocalAnaesthesia : true
  24. LocalAnaesthetic (Drug) : Lidocaine
  25. Immobilization : true
  26. Immobilization (Drug) : Tubocurarin 5mg/L
  27. ImmobilizationDose : 50ul
  28. *Control: Session
  29. ephys: true
  30. *Control: AmplifierControl
  31. resistancescale: 1
  32. maxresistance : 100MOhm
  33. *Control: SpectrumAnalyzer
  34. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  35. origin : [ before end of data, before signal, after signal ]
  36. offset : 0ms
  37. duration: 1000ms
  38. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  39. overlap : true
  40. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  41. fmax : 500Hz
  42. decibel : true
  43. pmin : -50dB
  44. *Model: PUnitModel
  45. General:
  46. EOD:
  47. eodtype : [ Sine, None, Sine, Apteronotus, Eigenmannia ]
  48. eodfreq : 800Hz
  49. eodfreqsd : 10Hz
  50. eodfreqtau : 10000s
  51. eodlocalamplitude : 1mV/cm
  52. eodglobalamplitude: 1mV/cm
  53. localstimulusgain : 1.00
  54. globalstimulusgain: 0.00
  55. stimulusgain : 1.00
  56. Spikes:
  57. voltagescale: 0.5
  58. Spike generator:
  59. spikemodel: [ Wang-Buzsaki, Stimulus, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
  60. noised : 0
  61. deltat : 0.05ms
  62. integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
  63. Voltage-gated current 1 - activation only:
  64. gmc : 0
  65. emc : -90mV
  66. mvmc : -40mV
  67. mwmc : 10mV
  68. taumc: 10ms
  69. Voltage-gated current 2 - activation and inactivation:
  70. gmhc : 0
  71. emhc : -90mV
  72. mvmhc : -40mV
  73. mwmhc : 10mV
  74. taummhc: 10ms
  75. pmmhc : 1
  76. hvmhc : -40mV
  77. hwmhc : 10mV
  78. tauhmhc: 10ms
  79. pmhhc : 1
  80. *Model: Stimulus
  81. Input:
  82. gain : 1
  83. offset: 0muA/cm^2
  84. *Model: Morris-Lecar
  85. General:
  86. params: [ Custom, Type I, Type II ]
  87. Calcium current:
  88. gca : 4nS
  89. eca : 120mV
  90. mvca: -1.2mV
  91. mkca: 18mV
  92. Potassium current:
  93. gk : 8nS
  94. ek : -84mV
  95. mvk : 12mV
  96. mkk : 17.4mV
  97. mphik: 0.067kHz
  98. Leak current:
  99. gl: 2nS
  100. el: -60mV
  101. c : 20pF
  102. Input:
  103. timescale: 10
  104. gain : 1
  105. offset : 40muA/cm^2
  106. *Model: Hodgkin-Huxley
  107. Sodium current:
  108. gna: 120mS/cm^2
  109. ena: 50mV
  110. Potassium current:
  111. gk: 36mS/cm^2
  112. ek: -77mV
  113. Leak current:
  114. gl : 0.3mS/cm^2
  115. el : -54.4mV
  116. c : 1muF/cm^2
  117. phi: 1
  118. Input:
  119. gain : 1
  120. offset: 0muA/cm^2
  121. *Model: Connor
  122. Sodium current:
  123. gna: 120mS/cm^2
  124. ena: 50mV
  125. Potassium current:
  126. gk: 20mS/cm^2
  127. ek: -77mV
  128. A current:
  129. gka: 47mS/cm^2
  130. eka: -80mV
  131. Leak current:
  132. gl : 0.3mS/cm^2
  133. el : -22mV
  134. c : 1muF/cm^2
  135. phi: 1
  136. Input:
  137. gain : 1
  138. offset: 0muA/cm^2
  139. *Model: Wang-Buzsaki
  140. Sodium current:
  141. gna: 35mS/cm^2
  142. ena: 55mV
  143. Potassium current:
  144. gk: 9mS/cm^2
  145. ek: -90mV
  146. Leak current:
  147. gl : 0.1mS/cm^2
  148. el : -65mV
  149. c : 1muF/cm^2
  150. phi: 5
  151. Input:
  152. gain : 1
  153. offset: 0muA/cm^2
  154. *Event Detector: Spikes-1
  155. Detector:
  156. minthresh: 4.9mV
  157. decay : 1sec
  158. ratio : 10%
  159. Indicators:
  160. resolution : 0.10mV
  161. trendthresh: 10%
  162. trendtime : 2.0sec
  163. *Event Detector: EOD
  164. threshold : 1.2mV
  165. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  166. *Event Detector: Chirps
  167. minthresh: 10Hz
  168. *Event Detector: LocalEOD-1
  169. threshold : 1.3mV
  170. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  171. *Event Detector: LocalBeat-1
  172. minthresh: 0.150mV
  173. *Event Detector: GlobalEFieldStimulus
  174. threshold : 2.6076mV
  175. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  176. *RePro: Pause
  177. duration: 1000ms
  178. repeats : 1
  179. savedata: false
  180. *RePro: Record
  181. duration: 1000ms
  182. repeats : 0
  183. *RePro: SaveTraces
  184. General:
  185. duration: 1000ms
  186. repeats : 0
  187. savedata: false
  188. split : false
  189. Analog input traces:
  190. trace-V-1 : true
  191. trace-EOD : true
  192. trace-LocalEOD-1 : true
  193. trace-GlobalEFieldStimulus: true
  194. Events:
  195. events-Spikes-1 : true
  196. events-EOD : true
  197. events-Chirps : true
  198. events-LocalEOD-1 : true
  199. events-LocalBeat-1-1 : true
  200. events-LocalBeat-1-2 : true
  201. events-GlobalEFieldStimulus: true
  202. *RePro: SetInputGain
  203. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  204. gainindex : 0
  205. interactive: true
  206. *RePro: SetOutput
  207. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  208. value : 0V
  209. interactive: false
  210. *RePro: Spectrogram
  211. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  212. width : 100ms
  213. step : 0ms
  214. tmax : 10s
  215. duration: 0s
  216. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  217. overlap : true
  218. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  219. powermax: true
  220. fmax : 2000Hz
  221. pmax : 0dB
  222. pmin : -50dB
  223. *RePro: TransferFunction
  224. Stimulus:
  225. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  226. offsetbase: [ custom, current ]
  227. offset : 0V
  228. amplitude : 1V
  229. intensity : 1
  230. fmax : 1000Hz
  231. duration : 1000ms
  232. pause : 1000ms
  233. repeats : 100
  234. Analysis:
  235. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  236. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  237. overlap : true
  238. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  239. plotstdevs : true
  240. plotcoherence: true
  241. *RePro: Wait
  242. absdate: false
  243. date : ~
  244. days : 0days
  245. time : "00:00:00"
  246. *RePro: BridgeTest
  247. amplitude: 1V
  248. duration : 10ms
  249. pause : 100ms
  250. *RePro: CapacityCompensation
  251. amplitude : 1V
  252. duration : 200ms
  253. frequency : 100Hz
  254. skipcycles: 10
  255. pause : 100ms
  256. *RePro: Beats
  257. Stimulation:
  258. duration : 10seconds
  259. pause : 20seconds
  260. ramp : 0.5seconds
  261. deltafrange : "10"
  262. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  263. fixeddf : false
  264. amplitude : 1mV/cm
  265. repeats : 10
  266. fakefish : 0Hz
  267. Chirps:
  268. generatechirps : false
  269. chirpsize : 100Hz
  270. chirpwidth : 100ms
  271. chirpampl : 0%
  272. chirpkurtosis : 1
  273. chirpfrequencies: ~
  274. chirptimesfile : ~
  275. Analysis:
  276. before : 1seconds
  277. after : 1seconds
  278. averagetime : 1seconds
  279. showstimulus: false
  280. split : false
  281. savetraces : false
  282. *RePro: CalibEField
  283. General:
  284. reset : false
  285. resetval : 0.1
  286. am : false
  287. beatfreq : 20Hz
  288. frequency: 600Hz
  289. duration : 600ms
  290. pause : 10ms
  291. Range:
  292. amplsel : [ contrast, amplitude ]
  293. targetcontrast : 20%
  294. mincontrast : 10%
  295. maxcontrast : 40%
  296. targetamplitude: 1mV/cm
  297. minamplitude : 0.5mV/cm
  298. maxamplitude : 2mV/cm
  299. numintensities : 10
  300. *RePro: JAR
  301. Stimulation:
  302. duration : 10seconds
  303. pause : 10seconds
  304. ramp : 0.5seconds
  305. deltafstep : 2Hz
  306. deltafmax : 12Hz
  307. deltafmin : -12Hz
  308. deltafrange : ~
  309. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  310. repeats : 200
  311. Amplitudes:
  312. amplsel : [ contrast, absolute ]
  313. contrastmax : 20%
  314. contrastmin : 10%
  315. contraststep: 20%
  316. amplmin : 1mV/cm
  317. amplmax : 2mV/cm
  318. amplstep : 1mV/cm
  319. S&timulus:
  320. genstim : true
  321. sinewave: true
  322. file : ~
  323. sigstdev: 1
  324. warpfile: false
  325. fakefish: 0Hz
  326. A&nalysis:
  327. before : 1seconds
  328. after : 8seconds
  329. savetraces : true
  330. jaraverage : 500ms
  331. chirpaverage: 20ms
  332. eodsavetime : 1000ms
  333. *RePro: LinearField
  334. duration: 1s
  335. *RePro: ManualJAR
  336. duration : 10seconds
  337. ramp : 0.5seconds
  338. fakefish : 0Hz
  339. before : 1seconds
  340. after : 1seconds
  341. averagetime: 1seconds
  342. split : false
  343. savetraces : false
  344. *RePro: BaselineActivity
  345. Timing:
  346. duration: 300ms
  347. repeats : 0
  348. Analysis:
  349. isimax : 20ms
  350. isistep : 0.2ms
  351. ratedt : 0.05ms
  352. ratetmax: 2ms
  353. Files:
  354. eodduration : 2000ms
  355. saveeodtrace: false
  356. saveeodtimes: false
  357. Control:
  358. auto : [ never, once, always ]
  359. adjust: false
  360. *RePro: Chirps
  361. Chirp parameter:
  362. nchirps : 10
  363. beatpos : 10
  364. beatstart : 0.25
  365. minspace : 200ms
  366. firstspace : 200ms
  367. chirpsize : 60Hz
  368. chirpwidth : 14ms
  369. chirpampl : 2%
  370. chirpsel : [ generated, from file ]
  371. chirpkurtosis: 1
  372. file : [ /home/efish/Desktop/doublePeakChirp.dat, ~, /home/efish/Desktop/doublePeakChirp.dat ]
  373. Beat parameter:
  374. deltaf : 10Hz
  375. contrast: 20%
  376. am : true
  377. sinewave: true
  378. playback: false
  379. pause : 1000ms
  380. repeats : 6
  381. Analysis:
  382. sigma : 2ms
  383. adjust: false
  384. *RePro: FICurve
  385. Test-Intensities:
  386. duration : 400ms
  387. maxintfac : 120%
  388. minintfac : 80%
  389. nints : 16
  390. repeats : 1
  391. blockrepeats : 10
  392. singlerepeats: 1
  393. intshuffle : [ AlternateOutUp, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  394. intincrement : -2
  395. Pre-Intensities:
  396. preduration : 0ms
  397. maxpreintfac : 140%
  398. minpreintfac : 60%
  399. npreints : 3
  400. preintshuffle: [ AlternateInDown, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  401. Control:
  402. am : true
  403. pause : 1000ms
  404. delay : 200ms
  405. onsettime : 50ms
  406. rangeintincrement: 4
  407. minrate : 40Hz
  408. minratefrac : 15%
  409. adjust : false
  410. *RePro: FileStimulus
  411. Stimulus:
  412. file : [ /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat, ~, /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat ]
  413. sigstdev : 0.3
  414. duration : 10000ms
  415. pause : 1000ms
  416. amplsel : [ contrast, absolute ]
  417. contrast : 10%
  418. amplitude: 1mV/cm
  419. am : true
  420. repeats : 22
  421. Additional noise:
  422. noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
  423. uppercutoff : 600Hz
  424. lowercutoff : 0Hz
  425. noisetau : 10ms
  426. noisecontrast: 5%
  427. noiseampl : 80mV/cm
  428. Analysis:
  429. binwidth: 5ms
  430. before : 0ms
  431. after : 0ms
  432. plotpsd : false
  433. psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  434. adjust : false
  435. *RePro: SAM
  436. Stimulus:
  437. duration: 400ms
  438. pause : 100ms
  439. freqsel : [ absolute, relative to EOD, absolute ]
  440. deltaf : 20Hz
  441. contrast: 20%
  442. repeats : 0
  443. am : false
  444. sinewave: true
  445. Analysis:
  446. skip : 0.5Periods
  447. ratebins: 10
  448. before : 0ms
  449. after : 0ms
  450. adjust : false
  451. *Attenuator-0
  452. gain : 1.0337
  453. offset: 0
  454. *Attenuator-1
  455. gain : 0.063512
  456. offset: 0