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      LICENSE
  2. 47 0
      README.md
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LICENSE

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+Creative Commons CC0 1.0 Universal
+CREATIVE COMMONS CORPORATION IS NOT A LAW FIRM AND DOES NOT PROVIDE LEGAL SERVICES. DISTRIBUTION OF THIS DOCUMENT DOES NOT CREATE AN ATTORNEY-CLIENT RELATIONSHIP. CREATIVE COMMONS PROVIDES THIS INFORMATION ON AN "AS-IS" BASIS. CREATIVE COMMONS MAKES NO WARRANTIES REGARDING THE USE OF THIS DOCUMENT OR THE INFORMATION OR WORKS PROVIDED HEREUNDER, AND DISCLAIMS LIABILITY FOR DAMAGES RESULTING FROM THE USE OF THIS DOCUMENT OR THE INFORMATION OR WORKS PROVIDED HEREUNDER.
+Statement of Purpose
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+ 47 - 0
README.md

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+# Stimulating Modular Cultures
+## Data repository
+
+This repository contains experimental data, processed analysis results, and rendered movies to accompany the paper.
+
+Citable reference:
+```bibtex
+@misc{yamamoto_modular_2022,
+  title = {Modular Architecture Facilitates Noise-Driven Control of Synchrony in Neuronal Networks},
+  author = {Yamamoto, Hideaki and Spitzner, F. Paul and Takemuro, Taiki and Buend{\'i}a, Victor and Morante, Carla and Konno, Tomohiro and Sato, Shigeo and {Hirano-Iwata}, Ayumi and Priesemann, Viola and Mu{\~n}oz, Miguel A. and Zierenberg, Johannes and Soriano, Jordi},
+  year = {2022},
+  eprint = {2205.10563},
+  eprinttype = {arxiv},
+  primaryclass = {q-bio},
+  institution = {{arXiv}},
+  doi = {10.48550/arXiv.2205.10563},
+  url = {http://arxiv.org/abs/2205.10563},
+  archiveprefix = {arXiv},
+}
+```
+
+The source code is available via GitHub: [https://github.com/Priesemann-Group/stimulating_modular_cultures](https://github.com/Priesemann-Group/stimulating_modular_cultures)
+
+To enable plot scripts using the downloaded data (this repo), extract the `zip` files and place the [`/dat/`](dat/) folder inside the base directory of the GitHub repository.
+
+The following structure is assumed:
+```
+stimulating_modular_cultures (code repo)/
+├── ana/paper_plots.py
+├── ...
+└── dat/
+    ├── experiments/
+    │   ├── processed/ (extracted zip)
+    │   └── raw/       (extracted zip)
+    │       └── 1b/realization_id (e.g. 210315_A)
+    └── simulations/
+        ├── lif/
+        │   ├── processed/ (extracted zip)
+        │   └── raw/       (not provided)
+        └── meso/
+            ├── processed/ (extracted zip)
+            └── raw/       (not provided)
+...
+```
+
+
+

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dat/experiments/processed.zip

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+/annex/objects/MD5-s16346814--5223002c96bee0075d2f8d5c08f8896a

+ 1 - 0
dat/experiments/raw.zip

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+/annex/objects/MD5-s414002695--8eb1d98a6c36b081559bd7729a3fcf49

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dat/simulations/lif/processed.zip

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+/annex/objects/MD5-s1855763409--661596f12b6125347291c768b31ad6f8

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dat/simulations/meso/processed.zip


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movies/experiments/s1_opto_1b_210719_B_pre.mov

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+/annex/objects/MD5-s37966354--bae477447a4ead141450ff541a70a775

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movies/experiments/s2_opto_1b_210719_B_stim.mov

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+/annex/objects/MD5-s37950177--6b6b23e44f9da16e39e7492d7c55f109

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movies/experiments/s3_kcl_1b_210720_B_pre.mov

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+/annex/objects/MD5-s37980675--c5049cb0749802064e601c6134bba66b

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movies/experiments/s4_kcl_1b_210720_B_stim.mov

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+/annex/objects/MD5-s38049749--e62521ac7ae8dd2535a9253b54e402cb

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movies/experiments/s5_bic_1b_220128_pre.mov

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+/annex/objects/MD5-s38054309--1b6c54419db7dfa06b63ab49ea09bcf6

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movies/experiments/s6_bic_1b_220128_stim.mov

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+/annex/objects/MD5-s38057218--a4668720f1a451ec55f93384906419e7

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movies/experiments/sx_opto_merged_210726_C_pre.mov

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+/annex/objects/MD5-s38100963--7e942b8095ee29455a3c8d55b70ce7ee

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movies/experiments/sx_opto_merged_210726_C_stim.mov

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+/annex/objects/MD5-s38113134--13c20224dfa61483f6bf5a48a46f393a

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movies/simulations/README.md

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+# Movies of simulations
+
+The files that start with `sx_` stem from the initial submission, where we simulated noise applied to _all_ modules (global stimulation). In this case, the freuqency is the total stimulation rate.
+
+The rest (mostly `sy_`) were created later, applying 20Hz extra, only in the lower two modules (orange). Also, for those topologies, the in-degree was fixed to 30 (this was not the case for those above).

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movies/simulations/s8_k=3_20Hz.mp4

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+/annex/objects/MD5-s12921529--529b1b1549fe5140d98471b1bffd6be0

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movies/simulations/sx_k=10_80Hz.mp4


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movies/simulations/sx_k=10_90Hz.mp4

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+/annex/objects/MD5-s10337613--fa4959cc750a6a0dc95de713d55f8b43

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movies/simulations/sx_k=1_80Hz.mp4


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movies/simulations/sx_k=1_90Hz.mp4

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+/annex/objects/MD5-s10266585--076a0bf8efb3afcc3d547e996f9ab5bf

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movies/simulations/sx_k=5_80Hz.mp4


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movies/simulations/sx_k=5_90Hz.mp4

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+/annex/objects/MD5-s10239326--b9ca0feb84a0e4be8235f201d62eb468

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movies/simulations/sx_k=5_combined.mp4


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movies/simulations/sy_k=10_20Hz.mp4

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+/annex/objects/MD5-s13890621--9fab3eb7c1422cfc24015db215f0c6ea

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movies/simulations/sy_k=1_0Hz.mp4


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movies/simulations/sy_k=1_20Hz.mp4

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+/annex/objects/MD5-s12248769--89940dbdb57a89baa49f5370872969ee

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movies/simulations/sy_k=5_0Hz.mp4


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+/annex/objects/MD5-s13570876--3fe0680c386b251c7aac59595a957d80