relacsplugins.cfg 13 KB

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  1. *Metadata
  2. Recording:
  3. Recording quality: [ poor, good, poor, Poor, Fair, Good ]
  4. Comment : ~
  5. Experimenter : [ Jan Grewe, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Fabian Sinz, Fabian Sinz, Jan Grewe, Jan Benda ]
  6. WaterTemperature : 27°C
  7. WaterConductivity: 232uS/cm
  8. Cell:
  9. CellType (Cell type) : [ E-Cell, unknow, E-Cell, unkown, E-cell, E-cell superficial, I-Cell, P-unit, Ampullary, T-unit ]
  10. Structure (Recording location): [ Brain, Nerve, Brain ]
  11. BrainRegion : [ ELL, Torus, n.A., ELL ]
  12. BrainSubRegion : [ LS, LS, CLS, CMS, MS ]
  13. Depth : -917um
  14. Lateral position : 1.3mm
  15. Transverse section : -5
  16. Subject:
  17. Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
  18. Gender (Sex): [ unknown, unknown, Male, Female ]
  19. Size : 20cm
  20. Weight : 15.5g
  21. Identifier : "2013lepto0002"
  22. -Preparation-:
  23. Type : [ in vivo, in vivo, slice ]
  24. Anaesthesia : true
  25. Anaesthetic (Drug) : MS 222
  26. AnaestheticDose (Concentration): 125mg/l
  27. LocalAnaesthesia : true
  28. LocalAnaesthetic (Drug) : Lidocaine
  29. Immobilization : true
  30. Immobilization (Drug) : Tubocurarin 5mg/L
  31. ImmobilizationDose : 75ul
  32. *Control: Session
  33. ephys: true
  34. *Control: AmplifierControl
  35. initmode : [ Bridge, Current-clamp, Voltage-clamp, Manual selection ]
  36. resistancescale : 1
  37. resistanceperiod: 50ms
  38. maxresistance : 100MOhm
  39. adjust : false
  40. buzzpulse : 750ms
  41. showbridge : true
  42. showcc : false
  43. showvc : false
  44. showmanual : false
  45. *Control: SpectrumAnalyzer
  46. intrace : [ V-1, V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  47. origin : [ before end of data, before signal, after signal ]
  48. offset : 0ms
  49. duration: 1000ms
  50. size : [ "8192", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  51. overlap : true
  52. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  53. fmax : 500Hz
  54. decibel : true
  55. pmin : -50dB
  56. *Model: PUnitModel
  57. General:
  58. EOD:
  59. eodtype : [ Sine, None, Sine, Apteronotus, Eigenmannia ]
  60. eodfreq : 800Hz
  61. eodfreqsd : 10Hz
  62. eodfreqtau : 10000s
  63. eodlocalamplitude : 1mV/cm
  64. eodglobalamplitude: 1mV/cm
  65. localstimulusgain : 1.00
  66. globalstimulusgain: 0.00
  67. stimulusgain : 1.00
  68. Spikes:
  69. voltagescale: 0.5
  70. Spike generator:
  71. spikemodel: [ Wang-Buzsaki, Stimulus, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
  72. noised : 0
  73. deltat : 0.05ms
  74. integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
  75. Voltage-gated current 1 - activation only:
  76. gmc : 0
  77. emc : -90mV
  78. mvmc : -40mV
  79. mwmc : 10mV
  80. taumc: 10ms
  81. Voltage-gated current 2 - activation and inactivation:
  82. gmhc : 0
  83. emhc : -90mV
  84. mvmhc : -40mV
  85. mwmhc : 10mV
  86. taummhc: 10ms
  87. pmmhc : 1
  88. hvmhc : -40mV
  89. hwmhc : 10mV
  90. tauhmhc: 10ms
  91. pmhhc : 1
  92. *Model: Stimulus
  93. Input:
  94. gain : 1
  95. offset: 0muA/cm^2
  96. *Model: Morris-Lecar
  97. General:
  98. params: [ Custom, Type I, Type II ]
  99. Calcium current:
  100. gca : 4nS
  101. eca : 120mV
  102. mvca: -1.2mV
  103. mkca: 18mV
  104. Potassium current:
  105. gk : 8nS
  106. ek : -84mV
  107. mvk : 12mV
  108. mkk : 17.4mV
  109. mphik: 0.067kHz
  110. Leak current:
  111. gl: 2nS
  112. el: -60mV
  113. c : 20pF
  114. Input:
  115. timescale: 10
  116. gain : 1
  117. offset : 40muA/cm^2
  118. *Model: Hodgkin-Huxley
  119. Sodium current:
  120. gna: 120mS/cm^2
  121. ena: 50mV
  122. Potassium current:
  123. gk: 36mS/cm^2
  124. ek: -77mV
  125. Leak current:
  126. gl : 0.3mS/cm^2
  127. el : -54.4mV
  128. c : 1muF/cm^2
  129. phi: 1
  130. Input:
  131. gain : 1
  132. offset: 0muA/cm^2
  133. *Model: Connor
  134. Sodium current:
  135. gna: 120mS/cm^2
  136. ena: 50mV
  137. Potassium current:
  138. gk: 20mS/cm^2
  139. ek: -77mV
  140. A current:
  141. gka: 47mS/cm^2
  142. eka: -80mV
  143. Leak current:
  144. gl : 0.3mS/cm^2
  145. el : -22mV
  146. c : 1muF/cm^2
  147. phi: 1
  148. Input:
  149. gain : 1
  150. offset: 0muA/cm^2
  151. *Model: Wang-Buzsaki
  152. Sodium current:
  153. gna: 35mS/cm^2
  154. ena: 55mV
  155. Potassium current:
  156. gk: 9mS/cm^2
  157. ek: -90mV
  158. Leak current:
  159. gl : 0.1mS/cm^2
  160. el : -65mV
  161. c : 1muF/cm^2
  162. phi: 5
  163. Input:
  164. gain : 1
  165. offset: 0muA/cm^2
  166. *Event Detector: Spikes-1
  167. Detector:
  168. decay : 1sec
  169. ratio : 5%
  170. testwidth: false
  171. maxwidth : 2.0ms
  172. Indicators:
  173. resolution : 0.10mV
  174. trendthresh: 10%
  175. trendtime : 2.0sec
  176. *Event Detector: EOD
  177. threshold : 1.6mV
  178. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  179. *Event Detector: Chirps
  180. minthresh: 10Hz
  181. *Event Detector: LocalEOD-1
  182. threshold : 2.3mV
  183. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  184. *Event Detector: LocalBeat-1
  185. minthresh: 0.100mV
  186. *Event Detector: GlobalEFieldStimulus
  187. threshold : 17.171mV
  188. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  189. *RePro: Pause
  190. duration: 1000ms
  191. repeats : 1
  192. savedata: false
  193. *RePro: Record
  194. duration: 1000ms
  195. repeats : 0
  196. *RePro: SaveTraces
  197. General:
  198. duration: 1000ms
  199. repeats : 0
  200. savedata: false
  201. split : false
  202. Analog input traces:
  203. trace-V-1 : true
  204. trace-EOD : true
  205. trace-LocalEOD-1 : true
  206. trace-GlobalEFieldStimulus: true
  207. Events:
  208. events-Spikes-1 : true
  209. events-EOD : true
  210. events-Chirps : true
  211. events-LocalEOD-1 : true
  212. events-LocalBeat-1-1 : true
  213. events-LocalBeat-1-2 : true
  214. events-GlobalEFieldStimulus: true
  215. *RePro: SetInputGain
  216. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  217. gainindex : 0
  218. interactive: true
  219. *RePro: SetOutput
  220. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  221. value : 0V
  222. interactive: false
  223. *RePro: Spectrogram
  224. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  225. width : 100ms
  226. step : 0ms
  227. tmax : 10s
  228. duration: 0s
  229. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  230. overlap : true
  231. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  232. powermax: true
  233. fmax : 2000Hz
  234. pmax : 0dB
  235. pmin : -50dB
  236. *RePro: TransferFunction
  237. Stimulus:
  238. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  239. offsetbase: [ custom, current ]
  240. offset : 0V
  241. amplitude : 1V
  242. intensity : 1
  243. fmax : 1000Hz
  244. duration : 1000ms
  245. pause : 1000ms
  246. repeats : 100
  247. Analysis:
  248. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  249. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  250. overlap : true
  251. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  252. plotstdevs : true
  253. plotcoherence: true
  254. *RePro: Wait
  255. absdate: false
  256. date : ~
  257. days : 0days
  258. time : "00:00:00.000"
  259. *RePro: BridgeTest
  260. amplitude: 1V
  261. duration : 10ms
  262. pause : 100ms
  263. average : 10
  264. plottrace: true
  265. *RePro: CapacityCompensation
  266. amplitude : 1V
  267. duration : 200ms
  268. frequency : 100Hz
  269. skipcycles: 10
  270. pause : 100ms
  271. *RePro: Iontophoresis
  272. durationpos : 1s
  273. amplitudepos : 1V
  274. pausepos : 1s
  275. durationneg : 1s
  276. amplitudeneg : 1V
  277. pauseneg : 1s
  278. fortunes : true
  279. fortuneperiod: 10s
  280. *RePro: Beats
  281. Stimulation:
  282. duration : 10seconds
  283. pause : 20seconds
  284. ramp : 0.5seconds
  285. deltafrange : "10"
  286. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  287. fixeddf : false
  288. amplitude : 1mV/cm
  289. repeats : 10
  290. fakefish : 0Hz
  291. Chirps:
  292. generatechirps : false
  293. chirpsize : 100Hz
  294. chirpwidth : 100ms
  295. chirpampl : 0%
  296. chirpkurtosis : 1
  297. chirpfrequencies: ~
  298. chirptimesfile : ~
  299. Analysis:
  300. before : 1seconds
  301. after : 1seconds
  302. averagetime : 1seconds
  303. showstimulus: false
  304. split : false
  305. savetraces : false
  306. *RePro: CalibEField
  307. General:
  308. reset : false
  309. resetval : 0.1
  310. am : false
  311. beatfreq : 20Hz
  312. frequency: 600Hz
  313. duration : 600ms
  314. pause : 10ms
  315. Range:
  316. amplsel : [ contrast, amplitude ]
  317. targetcontrast : 20%
  318. mincontrast : 10%
  319. maxcontrast : 40%
  320. targetamplitude: 1mV/cm
  321. minamplitude : 0.5mV/cm
  322. maxamplitude : 2mV/cm
  323. numintensities : 10
  324. *RePro: JAR
  325. Stimulation:
  326. duration : 10seconds
  327. pause : 10seconds
  328. ramp : 0.5seconds
  329. deltafstep : 2Hz
  330. deltafmax : 12Hz
  331. deltafmin : -12Hz
  332. deltafrange : ~
  333. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  334. repeats : 200
  335. Amplitudes:
  336. amplsel : [ contrast, absolute ]
  337. contrastmax : 20%
  338. contrastmin : 10%
  339. contraststep: 20%
  340. amplmin : 1mV/cm
  341. amplmax : 2mV/cm
  342. amplstep : 1mV/cm
  343. S&timulus:
  344. genstim : true
  345. sinewave: true
  346. file : ~
  347. sigstdev: 1
  348. warpfile: false
  349. fakefish: 0Hz
  350. A&nalysis:
  351. before : 1seconds
  352. after : 8seconds
  353. savetraces : true
  354. jaraverage : 500ms
  355. chirpaverage: 20ms
  356. eodsavetime : 1000ms
  357. *RePro: LinearField
  358. duration: 1s
  359. *RePro: ManualJAR
  360. duration : 10seconds
  361. ramp : 0.5seconds
  362. fakefish : 0Hz
  363. before : 1seconds
  364. after : 1seconds
  365. averagetime: 1seconds
  366. split : false
  367. savetraces : false
  368. *RePro: BaselineActivity
  369. Timing:
  370. duration: 300ms
  371. repeats : 0
  372. Analysis:
  373. isimax : 20ms
  374. isistep : 0.2ms
  375. ratedt : 0.05ms
  376. ratetmax: 2ms
  377. Files:
  378. eodduration : 2000ms
  379. saveeodtrace: false
  380. saveeodtimes: false
  381. Control:
  382. auto : [ never, once, always ]
  383. adjust: false
  384. *RePro: Chirps
  385. Chirp parameter:
  386. nchirps : 10
  387. beatpos : 10
  388. beatstart : 0.25
  389. minspace : 200ms
  390. firstspace : 200ms
  391. chirpsize : 60Hz
  392. chirpwidth : 14ms
  393. chirpampl : 2%
  394. chirpsel : [ generated, from file ]
  395. chirpkurtosis: 1
  396. file : [ /home/efish/Desktop/doublePeakChirp.dat, ~, /home/efish/Desktop/doublePeakChirp.dat ]
  397. Beat parameter:
  398. deltaf : 200Hz
  399. contrast: 20%
  400. am : true
  401. sinewave: true
  402. playback: false
  403. pause : 1000ms
  404. repeats : 6
  405. Analysis:
  406. sigma : 2ms
  407. adjust: false
  408. *RePro: FICurve
  409. Test-Intensities:
  410. duration : 400ms
  411. maxintfac : 120%
  412. minintfac : 80%
  413. nints : 16
  414. repeats : 1
  415. blockrepeats : 10
  416. singlerepeats: 1
  417. intshuffle : [ AlternateOutUp, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  418. intincrement : -2
  419. Pre-Intensities:
  420. preduration : 0ms
  421. maxpreintfac : 140%
  422. minpreintfac : 60%
  423. npreints : 3
  424. preintshuffle: [ AlternateInDown, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  425. Control:
  426. am : true
  427. pause : 1000ms
  428. delay : 200ms
  429. onsettime : 50ms
  430. rangeintincrement: 4
  431. minrate : 40Hz
  432. minratefrac : 15%
  433. adjust : false
  434. *RePro: FileStimulus
  435. Stimulus:
  436. file : [ /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat, ~, /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat ]
  437. sigstdev : 0.3
  438. duration : 10000ms
  439. pause : 1000ms
  440. amplsel : [ contrast, absolute ]
  441. contrast : 10%
  442. amplitude: 1mV/cm
  443. am : true
  444. repeats : 22
  445. Additional noise:
  446. noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
  447. uppercutoff : 600Hz
  448. lowercutoff : 0Hz
  449. noisetau : 10ms
  450. noisecontrast: 5%
  451. noiseampl : 80mV/cm
  452. Analysis:
  453. binwidth: 5ms
  454. before : 0ms
  455. after : 0ms
  456. plotpsd : false
  457. psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  458. adjust : false
  459. *RePro: SAM
  460. Stimulus:
  461. duration: 400ms
  462. pause : 100ms
  463. freqsel : [ absolute, relative to EOD, absolute ]
  464. deltaf : 20Hz
  465. contrast: 10%
  466. repeats : 0
  467. am : false
  468. sinewave: true
  469. Analysis:
  470. skip : 0.5Periods
  471. ratebins: 10
  472. before : 0ms
  473. after : 0ms
  474. adjust : false
  475. *Attenuator-0
  476. gain : 0.8911
  477. offset: 0
  478. *Attenuator-1
  479. gain : 0.065263
  480. offset: 0